(A) Electron micrographs of soleus muscle showing intermyofibrillar mitochondria in sections from indicated mice fed CD or HFD. Scale bars, 200 nm. n = 3 to 4. (B and C) Mitochondrial respiration rates were determined on mitochondria isolated from muscles of indicated mice using pyruvate (B) or succinate (C) as substrates. Pyruvate/malate (Py/M)- or Suc/Rot-stimulated respiration is shown. n = 3 to 7. (D) Heatmap analysis of genes differentially regulated in LONP1 mKO muscles. Each group is represented by RNA sequencing (RNA-seq) data from two independent samples generated from muscles of 2- and 6-week-old mice. Red, relative increase in abundance; blue, relative decrease. (E) Gene Ontology (GO) enrichment analysis of genes that were induced early at 2 weeks old and were further enhanced by LONP1 abrogation at 6 weeks old, with top 10 terms shown. The dot size reflects the gene count. (F) Expression of genes (qRT-PCR) related to UPR, amino acid metabolism, one-carbon metabolism, and myokines in muscles from HFD-fed LONP1 mKO mice. n = 6. (G) Serum FGF21 and GDF15 levels. n = 6 to 9. Color legend for the panel: white, WT CD; gray, LONP1 mKO CD; orange, WT HFD; diagonal hatch, LONP1 mKO HFD. Values represent means ± SEM. *P < 0.05 versus corresponding WT controls. Two-tailed unpaired Student’s t test (B, C, and F) or one-way ANOVA (G) was performed.