Appendix 1—table 1. Composition of baseline outbreaker2 model and different sensitivity analyses.
| Scenario type | Onset of symptoms | Genetic data | Contact data | Short serial interval | Longer serial interval | Low outlier threshold | Medium outlier threshold | Default outlier threshold |
|---|---|---|---|---|---|---|---|---|
| Baseline scenario | X | X | X | X | X | |||
| Sensitivity analyses | ||||||||
| 1. | X | X | X | X | ||||
| 2. | X | X | X | X | X | |||
| 3. | X | X | X* | X | X | |||
| 4. | X | X | X† | X | X | |||
| 5. | X | X | X | X | X | |||
| 6. | X | X | X | X | X | |||
*
For this model, we used the HR data for healthcare worker presence (with some corrections).
†
For this model, we assumed that patients were no longer infectious after the date of positive RT-PCR.