Table 1.

Overlap of WES and WGS data

Annotation	WGS	WES	Intersection of WGS and WES	Unique to WES	Present WES (%)	Missing WES (%)	Present WGS (%)	Missing WGS (%)
Coding	6,380,795	5,781,829	5,686,934	94,895	89.29	10.71	98.53	1.47
Splice	445,499	397,226	388,961	8,265	87.54	12.46	98.18	1.82
5′ UTR	2,125,413	590,484	572,996	17,488	27.56	72.44	99.18	0.82
3′ UTR	7,214,427	764,864	743,790	21,074	10.57	89.43	99.71	0.29
Proximal	249,702,570	6,189,465	5,952,145	237,320	2.48	97.52	99.91	0.09
Intergenic	292,259,782	91,836	83,360	8,476	0.03	99.97	More than 99.99	Less than 0.01

Results are computed for the 109,618 samples present in both datasets and are limited to those variants that are present in at least one individual in either dataset. Numbers refer to the number of variants found in the dataset. WGS refers to the GraphTyperHQ dataset and WES refers to a set of 200,000 WES-sequenced indivdiduals⁵⁹. Missing and present percentages are computed from the number of variants in the union of the two datasets.