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. Author manuscript; available in PMC: 2022 Sep 28.
Published in final edited form as: Mod Pathol. 2022 Mar 28;35(8):1055–1065. doi: 10.1038/s41379-022-01023-9

Table 2.

Distribution of the most prevalent fusion transcript variants by exon usage in the current study

Histotype Fusion transcript variant Number Percentage
Angiomatoid fibrous histiocytoma (AFH) EWSR1-ATF1 ex7-ex5 3 37.5
EWSR1-ATF1 ex7-ex7 1 12.5
EWSR1-CREB1 ex7-ex7 3 37.5
Clear cell sarcoma (CCS) EWSR1-ATF1 ex7-ex4 1 5.6
EWSR1-ATF1 ex7-ex5 3 16.7
EWSR1-ATF1 ex8-ex4 10 55.6
EWSR1-ATF1 ex9-ex4 2 11.1
EWSR1-CREB1 ex7-ex7 1 5.6
EWSR1-CREM ex8-ex7 1 5.6
Clear cell sarcoma-like tumor of the gastrointestinal tract (GICCS) EWSR1-ATF1 ex7-ex5 1 11.1
EWSR1-ATF1 ex8-ex4 5 55.6
EWSR1-CREB1 ex6-ex6 1 11.1
EWSR1-CREB1 ex7-ex6 1 11.1
EWSR1-CREB1 ex7-ex7 1 11.1
Hyalinizing clear cell carcinoma (HCCC) EWSR1-ATF1 ex7-ex4 1 14.3
EWSR1-ATF1 ex8-ex4 1 14.3
EWSR1-ATF1 ex9-ex2 1 14.3
EWSR1-ATF1 ex10-ex3 1 14.3
EWSR1-ATF1 ex11-ex3 3 42.9
Malignant epithelioid neoplasm with predilection for mesothelial-lined cavities (ME) FUS-CREM ex8-ex5 1 50.0
FUS-CREM ex8-ex7 1 50.0
Mesothelioma (Meso) EWSR1-ATF1 ex7-ex5 1 33.3
EWSR1-ATF1 ex13-ex5 1 33.3
EWSR1-CREM ex10-ex5 1 33.3

Transcripts: ATF1 (NM_005171); CREB1 (NM_134442); CREM (NM_181571); EWSR1 (NM_005243); FUS (NM_004960).