Table 1.
Amplification system of Pol gene.
Amplification stage | ||
---|---|---|
RT-PCR (25 μL) | Nest-PCR (50 μL) | |
Reaction conditions | 50°C, 30 min | 94°C, 2 min |
94°C, 3 min | 54°C, 1 min | |
35 cycles (94°C, 30 s; 54°C, 30 s; 72°C, 1 min 30 s) |
72°C, 1 min 30 s | |
72°C, 10 min | 30 cycles ( 94°C, 30 s; 54°C, 45 s; 72°C, 45 s) |
|
4°C, Constant preservation | 72°C, 10 min | |
4°C, Constant preservation | ||
Reagent (volume: μL) | 2 × One step mix (12.5) | 2 × Taq Plus Master Mix II (Dye Plus) (25) |
RT-21 (1) | RT-20 (2) | |
MAW26 (1) | Pro-1 (2) | |
RNase-free ddH2O (4.25) | RNase-free ddH2O (16) | |
One Step Enzyme Mix (1.25) | Template DNA (5) | |
Template RNA (5) | ||
Primers | MAW26 (TTGGAAATGTGGAAAGGAAGGAC, HXB2: 2028-2050) | Pro-1 (CAGAGCCAACAGCCCCACCA, HXB2: 2147-2166) |
RT21 (CTGTATTTCTGCTATTAAGTCTTTTGATGGG, HXB2: 3509-3539) | RT20 (CTGCCAGTTCTATGCTTC, HXB2: 3441-3462) |