Table 1.
Expression differences of trichome related genes between D. suzukii and D. subpulchrella
| Gene name | log2CPM | Log2Fold-change (D. suzukii/D. subpulchrella) |
FDR | Function in trichome formation |
|---|---|---|---|---|
| wg | 5.8 | − 0.51 | 5.2 × 10− 2 | Upstream genes of svb |
| abd-A | 7.2 | − 0.20 | 3.2 × 10− 1 | Upstream genes of svb |
| Ubx | 2.3 | − 0.61 | 3.8 × 10− 1 | Upstream genes of svb |
| hh | 4.9 | − 0.28 | 3.6 × 10− 1 | Upstream genes of svb |
| lin | 5.1 | − 0.14 | 6.2 × 10− 1 | Upstream genes of svb |
| Ser | 7.8 | − 0.43 | 2.0 × 10− 2 | Upstream genes of svb |
| rho | 4.0 | 0.24 | 5.8 × 10− 1 | Upstream genes of svb |
| aos | 4.0 | − 0.49 | 1.2 × 10− 1 | Upstream genes of svb |
| SoxN | Low expressiona | – | – | Upstream genes of svb |
| D | 3.2 | − 0.37 | 4.3 × 10− 1 | Upstream genes of svb |
| tal | n.a.b | – | – | Upstream genes of svb |
| ovo/svb | 5.9 | − 0.43 | 3.0 × 10− 1 | Master control gene |
| sha | 8.5 | − 0.78 | 7.6 × 10− 5 | Actin bundling |
| sn | 8.8 | − 0.02 | 9.2 × 10− 1 | Actin bundling |
| f | 9.6 | 0.02 | 9.4 × 10− 1 | Actin bundling |
| wasp | 5.8 | 0.23 | 3.2 × 10− 1 | Actin bundling |
| mwh | 8.8 | − 0.51 | 6.7 × 10− 2 | Actin bundling |
| Actn | 10.0 | 0.17 | 4.0 × 10− 1 | Actin bundling |
| y | 4.4 | − 0.76 | 2.9 × 10− 2 | Cuticle |
| ChLD3 | 5.5 | 0.43 | 2.0 × 10− 1 | Cuticle |
| Cda5 | 6.0 | 0.40 | 2.1 × 10− 1 | Cuticle |
| Cpr11A | 3.0 | 1.34 | 3.1 × 10− 4 | Cuticle |
| kkv | 9.7 | 0.92 | 2.1 × 10− 4 | Cuticle |
| Peritrophin-A | Low expressiona | – | – | Cuticle |
| m | 10.6 | − 0.14 | 6.5 × 10− 1 | Membrane matrix |
| dyl | 9.8 | 0.74 | 9.9 × 10− 2 | Membrane matrix |
| mey | 11.7 | − 0.54 | 6.3 × 10− 3 | Membrane matrix |
| nyo | 10.3 | − 0.63 | 2.0 × 10− 3 | Membrane matrix |
| tyn | 12.7 | − 0.13 | 6.4 × 10− 1 | Membrane matrix |
| neo | 12.2 | − 0.53 | 7.7 × 10− 3 | Membrane matrix |
| zye | 5.4 | 0.20 | 5.9 × 10− 1 | Membrane matrix |
| cyr | 8.6 | − 0.07 | 8.7 × 10− 1 | Membrane matrix |
| CG16798 | 7.9 | − 0.18 | 5.5 × 10− 1 | Membrane matrix |
| CG12814 | 7.2 | − 0.40 | 5.7 × 10− 2 | Membrane matrix |
| CG4702 | 11.0 | 0.14 | 6.6 × 10− 1 | Unknown |
| CG8303 | 5.7 | − 0.04 | 9.2 × 10− 1 | Unknown |
| CG10175 | 3.2 | 1.95 | 6.2 × 10− 6 | Unknown |
| CG14395 | 9.2 | − 0.65 | 4.8 × 10− 2 | Unknown |
| CG15005 | 4.9 | 1.61 | 4.7 × 10− 6 | Unknown |
| CG15022 | Low expressiona | – | – | Unknown |
| CG31559 | 7.2 | − 0.99 | 8.0 × 10− 10 | Unknown |
| CG32694 | 3.6 | − 0.10 | 8.8 × 10− 1 | Unknown |
| CG45064 | n.a.b | – | – | Unknown |
| Sox21b | n.a.b | – | – | Unknown |
| Osi24 | 6.5 | 0.98 | 3.7 × 10− 3 | Unknown |
| Spn88Ea | 7.4 | − 0.14 | 5.4 × 10− 1 | Unknown |
| Tg | n.a.b | – | – | Unknown |
| Rcd6 | 4.0 | − 0.78 | 3.3 × 10− 3 | Unknown |
| PH4αEFB | 6.0 | − 0.01 | 9.7 × 10− 1 | Unknown |
| ImpE1 | 12.5 | 0.26 | 2.7 × 10− 1 | Unknown |
Genes related to trichome formation are from Arif et al. [18]
Underline indicates FDR < 0.01
aTPM < 1 in both species
bCDS was not available in our analysis