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. 2022 Jul 28;17(7):e0272270. doi: 10.1371/journal.pone.0272270

Table 2. Parameters for the t-distributed Stochastic Neighbor Embedding (t-SNE).

t-SNE parameter value
embedding dimensions 2
initialisation Principal Component Analysis
gradient calculation algorithm exact
learning rate 50
max. number of iterations 20,000
perplexity p 32