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. 2021 Dec 18;61(13):1987–1993. doi: 10.2169/internalmedicine.8594-21

Table 2.

The Procedure of Filtering Rare Pathogenic Variants Causing Cardiomyopathy from 5 Patients with R14del.

Filtering criteria Pt. 1 Pt. 2 Pt. 3 Pt. 4 Pt. 5
(i) Exonic variants excluding synonymous ones or splice-site variants 14,972 14,794 15,546 15,247 15,276
(ii) Variants included in 57 genes in Table 1 127 123 127 104 116
(iii) Variants with a minor allele frequency <0.1% in multiple variation databases 3 2 2 4 4
(iv) Variants listed as DM/DM? in HGMD or P/LP in ClinVar 1 1 1 1 1

The number of variants remained after each filtering criteria is shown. We used the Human Genome Variation Database version 2.3 (HGVD), the Tohoku Medical Megabank Organization 3.5kJPNv2 (Tommo) and genome aggregation database v2.1.1 (gnomAD) as variation databases in filtering criteria (iii).

DM: disease causing mutation, DM?: likely disease causing mutation, P: pathogenic, LP: likely pathogenic