Table 2.
The Procedure of Filtering Rare Pathogenic Variants Causing Cardiomyopathy from 5 Patients with R14del.
Filtering criteria | Pt. 1 | Pt. 2 | Pt. 3 | Pt. 4 | Pt. 5 |
---|---|---|---|---|---|
(i) Exonic variants excluding synonymous ones or splice-site variants | 14,972 | 14,794 | 15,546 | 15,247 | 15,276 |
(ii) Variants included in 57 genes in Table 1 | 127 | 123 | 127 | 104 | 116 |
(iii) Variants with a minor allele frequency <0.1% in multiple variation databases | 3 | 2 | 2 | 4 | 4 |
(iv) Variants listed as DM/DM? in HGMD or P/LP in ClinVar | 1 | 1 | 1 | 1 | 1 |
The number of variants remained after each filtering criteria is shown. We used the Human Genome Variation Database version 2.3 (HGVD), the Tohoku Medical Megabank Organization 3.5kJPNv2 (Tommo) and genome aggregation database v2.1.1 (gnomAD) as variation databases in filtering criteria (iii).
DM: disease causing mutation, DM?: likely disease causing mutation, P: pathogenic, LP: likely pathogenic