Table 1.
Primers and probes for this study.
| Name | Sequence (5′-3′) | Length (bp) | Region |
|---|---|---|---|
| F1 | TACTACTGAAATCTTCTAAACACACTGGAC | 157 | 32618–32774 |
| R1 | TTGGGGTATATTGCATCCTCAAATTATCCT | ||
| F2 | TTACTGTTTTTCTGTTCATCCCTCTTTCCT | 133 | 98304–98436 |
| R2 | GATCTATCCAACTGTGTTTTGTAATGGGTG | ||
| F3 | GTCGGGTAAATAGATCCTTGTTAGATTTTT | 187 | 141874–142060 |
| R3 | TCAGACCCTTTAGTCAACACATTATTTCTATC | ||
| F4 | TAAATATACTGCTCTGTCGAAATTGTTCGTTATTG | 115 | 191757–191871 |
| R4 | AAAATATGTCCATGTATCTAAAGGGTTTGCTG | ||
| F5 | CAAAAGAAAATTCAAACTCCTCAACTCATT | 137 | 239621–239757 |
| R5 | ACATTATTTCACTCATAAGAACACTCCTTC | ||
| F6 | CAAATCTTCTGGTAGTCTTTTGAGCCAATC | 102 | 284132–284233 |
| R6 | ACGTCATTATTTCTTCAACATCATTCACAA | ||
| F7 | TGTTCAAATCTTACTACATAACCCAAGAAA | 129 | 308308–308436 |
| R7 | CATATACAACATGACTAACCAACCAAAAGAAA | ||
| P | CAAAAGAAAATTCAAACTCCTCAACTCATT[THF]TTGGTTCATAACAACA | 46 | 239621–239667 |
| Pm | CAATAGACAATTCAAACTCCTCAACTCATT[THF]TTGGTTCATAACAACA | 46 | 239727–239757 |
| R5m | ACATTACTTCACTCATAAGATCACTCCTTC | 30 | 239621–239757 |
| F5-1 | AGTTTCTACCATTGGAGACTATGTCTTATCA | 31 | 239462–239493 |
| F5-2 | TACCATTGGAGACTATGTCTTATCAAACCCC | 31 | 239468–239499 |
| F5-3 | AGAGTATAGTTTCTACCATTGGAGACTATGTC | 32 | 239455–239487 |
| F5-4 | TTGTGACTCTGAGACGTACACCAAACCTATA | 31 | 239408–239439 |
| F5-5 | GTGACTCTGAGACGTACACCAAACCTATACCG | 32 | 239410–239442 |
| F5-4/Pm/R5m | / | 350 | 239408–239757 |