Table 2.
The Number of Synonymous and Nonsynonymous Substitutions, Together with Relative dN and dS Measures, Between Protein-Coding Genes Residing in the numt Fragments and Their mtDNA Homologs
| Numt | Fragment | Gene | Accession Number | Synonymous Substitutions | Nonsynonymous Substitutions | dN | dS | dN/dS | P-value |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1 | ND3 | DAC80253.1 | 48 | 14 | 0.0564 | 1.1062 | 0.051 | <0.01 |
| 2 | 1 | ATP8 | DAC80250.1 | 0 | 0 | — | — | — | — |
| 2 | 1 | ATP6 | DAC80251.1 | 0 | 0 | — | — | — | — |
| 2 | 1 | COX3 | DAC80252.1 | 0 | 0 | — | — | — | — |
| 2 | 1 | ND3 | DAC80253.1 | 0 | 0 | — | — | — | — |
| 2 | 1 | ND4L | DAC80254.1 | 1 | 0 | — | 0.0148 | 0 | — |
| 2 | 3 | ND2 | DAC80247.1 | 46 | 16 | 0.0218 | 0.1881 | 0.1160 | <0.01 |
| 3 | 1 | COX1 | DAC80248.1 | 0 | 1 | 0.0009 | — | — | — |
| 3 | 1 | ATP8 | DAC80250.1 | 0 | 0 | — | — | — | — |
| 3 | 1 | COX3 | DAC80252.1 | 13 | 4 | 0.0066 | 0.0835 | 0.0794 | <0.01 |
| 3 | 1 | ND3 | DAC80253.1 | 5 | 2 | 0.0075 | 0.0719 | 0.1042 | <0.01 |
| 3 | 1 | ND4L | DAC80254.1 | 4 | 0 | — | 0.0683 | 0 | — |
| 3 | 1 | ND4 | DAC80255.1 | 24 | 5 | 0.0052 | 0.0615 | 0.085 | <0.01 |
| 3 | 1 | ND5 | DAC80256.1 | 30 | 5 | 0.0038 | 0.0667 | 0.0562 | <0.01 |
| 3 | 2 | COX2 | DAC80249.1 | 7 | 1 | 0.0019 | 0.0472 | 0.0404 | <0.01 |
| 3 | 2 | ATP8 | DAC80250.1 | 0 | 1 | 0.0068 | — | — | — |
| 3 | 2 | ATP6 | DAC80251.1 | 4 | 5 | 0.0103 | 0.022 | 0.4668 | 0.2145 |
| 8 | 3 | ND4L | DAC80254.1 | 4 | 0 | — | 0.0683 | 0 | — |
| 8 | 3 | ND4 | DAC80255.1 | 0 | 0 | — | — | — | — |
| 8 | 3 | ND5 | DAC80256.1 | 0 | 0 | — | — | — | — |
| 8 | 3 | CYTB | DAC80258.1 | 0 | 0 | — | — | — | — |
Note.—Identities and NCBI accession numbers are provided for each gene.