Table 1.
Microbial community analysis
| Group | Data set | Sample | Read count | OTU count | Reads assigning taxonomic labels (coverage %) | ||||
|---|---|---|---|---|---|---|---|---|---|
| Class | Order | Family | Genus | Unassigned | |||||
| Control | FL | C1 | 15,261 | 1821 | 14,781 (96.9%) | 14,781 (96.9%) | 14,769 (96.8) | 13,455 (88.2%) | 480 (3.1%) |
| FL | C2 | 7022 | 1198 | 6819 (97.1%) | 6819 (97.1%) | 6810 (97.0%) | 5919 (84.3%) | 202 (2.9%) | |
| V4 PacBio | C1 | 9195 | 435 | 9181 (99.8%) | 9181 (99.8%) | 9178 (99.8%) | 8071 (87.8%) | 14 (0.2%) | |
| V4 PacBio | C2 | 3979 | 366 | 3955 (99.4%) | 3955 (99.4%) | 3951 (99.3%) | 3386 (85.1%) | 23 (0.6%) | |
| V4 Illumina | C1 | 105,426 | 1424 | 105,323 (99.9%) | 105,323 (99.9%) | 105,174 (99.8%) | 87,984 (83.5%) | 103 (0.1%) | |
| V4 Illumina | C2 | 139,693 | 1572 | 139,583 (99.9%) | 139,583 (99.9%) | 138,285 (99.0%) | 114,513 (82.0%) | 110 (0.1%) | |
| Inulin | FL | In1 | 13,481 | 2199 | 12,986 (96.3%) | 12,986 (96.3%) | 12,968 (96.2%) | 10,098 (74.9%) | 492 (3.6%) |
| FL | In2 | 5350 | 1056 | 4900 (91.6%) | 4900 (91.6%) | 4780 (89.3%) | 3131 (58.5%) | 449 (8.4%) | |
| V4 PacBio | In1 | 9609 | 618 | 9595 (99.9%) | 9595 (99.9%) | 9568 (99.6%) | 6919 (72.0%) | 14 (0.1%) | |
| V4 PacBio | In2 | 3309 | 353 | 3290 (99.4%) | 3290 (99.4%) | 3181 (96.1%) | 2060 (62.3%) | 19 (0.6%) | |
| V4 Illumina | In1 | 144,897 | 2036 | 144,761 (99.9%) | 144,761 (99.9%) | 144,228 (99.5%) | 85,122 (58.7%) | 135 (0.1%) | |
| V4 Illumina | In2 | 198,271 | 2036 | 198,171 (99.9%) | 198,171 (99.9%) | 195,756 (98.7%) | 96,617 (48.7%) | 99 (0.05%) | |