Reagent/Resource | Reference or Source | Identifier or Catalog Number |
---|---|---|
Experimental models | ||
Schizosaccharomyces pombe strains | This study | Appendix Table S1 |
Saccharomyces cerevisiae strain | Nick Buchler, NC State University, USA | Appendix Table S1 |
Recombinant DNA | ||
sgRNA sequences | This study | Appendix Table S2 |
Codon‐optimized mad1, mad2, and mad3 | This study | Appendix Table S3 |
PCR fragments for in vitro transcription | This study | Appendix Table S6 |
Antibodies | ||
Mouse anti‐Cdc13 (monoclonal) | Novus | Cat # NB200‐576; RRID: AB_10003103 |
Rabbit anti‐Cdc2 (polyclonal) | Santa‐Cruz | Cat # sc‐53; RRID: AB_2074908 |
Mouse anti‐GFP (mix of 2 monoclonals) | Roche | Cat # 11814460001; RRID: AB_390913 |
Rabbit anti‐Mad1 (polyclonal, against peptide ADSPRDPFQSRSQLC) | Heinrich et al (2013), PMID: 24161933 | N/A |
Rabbit anti‐Mad2 (polyclonal, against recombinant protein) | Sewart and Hauf (2017), PMID: 28366743 | N/A |
Rabbit anti‐Mad3 (polyclonal, against recombinant protein) | Sewart and Hauf (2017), PMID: 28366743 | N/A |
Rabbit anti‐Strep‐tag II (monoclonal, recombinant) | Abcam | Cat # ab180957 |
Rabbit anti‐Strep‐tag II (polyclonal) | Abcam | Cat # ab76949; RRID: AB_1524455 |
Mouse anti‐tubulin | Sigma | Cat # T5168; RRID: AB_477579 |
Goat anti‐mouse HRP | Jackson ImmunoResearch Labs | Cat # 115–035‐003; RRID: AB_10015289 |
Goat anti‐rabbit HRP | Jackson ImmunoResearch Labs | Cat # 111–035‐003; RRID: AB_2313567 |
Oligonucleotides and other sequence‐based reagents | ||
FISH probes | This study | Appendix Table S4 |
qPCR primers | This study | Appendix Table S5 |
Chemicals, enzymes, and other reagents | ||
4‐thiouracil (4tU) | Chem Impex | Cat # 21484 |
MTSEA biotin‐XX | Biotium | Cat # 90066 |
Cycloheximide (from Streptomyces griseus) | Chem Impex | Cat # 00083 |
Wizard SV Gel and PCR Clean‐Up System | Promega | Cat # A9285 |
SuperScript IV First Strand Synthesis System | ThermoFisher | Cat # 18091050 |
HiScribe T7 ARCA mRNA Kit (with tailing) | New England Biolabs | Cat # E2060S |
Monarch RNA Cleanup Kit | New England Biolabs | Cat # T2040S |
Rabbit Reticulocyte Lysate, Nuclease‐Treated | Promega | Cat # L4960 |
EasyTag EXPRESS 35S Protein Labeling Mix | Perkin Elmer | Cat # NEG772007MC |
SUPERase•In RNase Inhibitor | ThermoFisher | Cat # ACM2694 |
SuperSignal West Pico PLUS Chemiluminescent Substrate | ThermoFisher | Cat # 34580 |
cOmplete, EDTA‐free Protease Inhibitor Cocktail | Roche | Cat # 04693132001 |
Halt Protease Inhibitor Cocktail, EDTA‐Free (100X) | ThermoFisher | Cat # 87785 |
PhosSTOP | Roche | Cat # 04906837001 |
Halt Phosphatase Inhibitor Cocktail | ThermoFisher | Cat # 78420 |
Dynabeads Protein G | ThermoFisher | Cat # 10003D |
Dynabeads His‐Tag Isolation and Pull‐down | ThermoFisher | Cat # 10103D |
MagStrep “type3” XT beads | IBA Lifesciences | Cat # 2–4090‐002 |
Dynabeads MyOne Streptavidin C1 | Thermo Fisher | Cat # 65001 |
Oligo d(T)25 Magnetic Beads | New England Biolabs | Cat # S1419S |
Pierce BCA Protein Assay Kit | ThermoFisher | Cat # 23225 |
EMM (Edinburgh's Minimal Medium) | MP Biomedicals | Cat # 114110022 |
Lectin | Sigma | Cat # L1395 |
Software | ||
Fiji/ImageJ | Schindelin et al (2012), PMID: 22743772 | https://imagej.net/software/fiji/; RRID: SCR_002285 |
SoftWoRx | Applied Precision, GE Healthcare |
https://download.cytivalifesciences.com/cellanalysis/download_data/softWoRx/6.5.2/SoftWoRx.htm; RRID: SCR_019157 |
MetaMorph | Molecular Devices | Version 7.10.1 |
YeaZ | Dietler et al (2020), PMID: 33184262 | N/A |
ImageLab | Bio‐Rad Laboratories | Version 6.0.1 build 34 |
Matlab | Mathworks | https://www.mathworks.com ; RRID: SCR_001622 |
FISH‐Quant | Mueller et al (2013), PMID: 23538861 | N/A |
Trainable Weka Segmentation | Arganda‐Carreras et al (2017), PMID: 28369169 | N/A |
Prism 9 | GraphPad Software, Inc | https://www.graphpad.com ; RRID: SCR_002798 |
R | Cran.R | https://cran.r‐project.org ; RRID: SCR_001905 |
R studio | N/A | https://www.rstudio.com ; RRID: SCR_000432 |
tidyverse package | Cran.R | https://tidyverse.tidyverse.org ; RRID: SCR_019186, Version 1.3.1 |
ggplot2 package | Cran.R | https://ggplot2.tidyverse.org/ ; RRID: SCR_014601 |
alphashape3d package | Cran.R | https://CRAN.R‐project.org/package=alphashape3d, Version 1.3.1 |
boxcoxmix package | Cran.R | https://cran.r‐project.org/src/contrib/Archive/boxcoxmix/, Version 0.28 |
broom package | Cran.R | https://CRAN.R‐project.org/package=broom, Version 0.7.9 |
broom.mixed package | Cran.R | https://CRAN.R‐project.org/package=broom.mixed, Version 0.2.7 |
cairo package | Cran.R | https://CRAN.R‐project.org/package=Cairo, Version 1.5–12.2 |
cowplot package | Cran.R | https://cran.r‐project.org/package=cowplot ; RRID: SCR_018081, Version 1.1.1 |
descTools package | Cran.R | https://cran.r‐project.org/package=DescTools, Version 0.99.43 |
egg package | Cran.R | https://CRAN.R‐project.org/package=egg, Version 0.4.5 |
geometry package | Cran.R | https://CRAN.R‐project.org/package=geometry, Version 0.4.5 |
gridExtra package | Cran.R | https://CRAN.R‐project.org/package=gridExtra, Version 2.3 |
lemon package | Cran.R | https://CRAN.R‐project.org/package=lemon, Version 0.4.5 |
lme4 package | Cran.R | https://cran.r‐project.org/web/packages/lme4/index.html; RRID: SCR_015654 |
Irescale package | Cran.R | https://CRAN.R‐project.org/package=Irescale, Version 2.3.0 |
MASS package | Cran.R | https://cran.r‐project.org/package=MASS ; RRID: SCR_019125 |
mclust package | Cran.R | https://cran.r‐project.org/package=mclust |
nabor package | Cran.R | https://cran.r‐project.org/package=nabor |
pbkrtest package | Cran.R | https://cran.r‐project.org/package=pbkrtest |
plotly package | Cran.R | https://plotly.com/r/; RRID: SCR_013991, Version 4.10.0 |
plyr package | Cran.R | https://cran.r‐project.org/package=plyr |
readxl package | Cran.R | https://cran.r‐project.org/web/packages/readxl/index.html ; RRID: SCR_018083, Version 1.3.1 |
rgl package | Cran.R | https://CRAN.R‐project.org/package=rgl, Version 0.107.14 |
sf package | Cran.R | https://CRAN.R‐project.org/package=sf |
shotGroups package | Cran.R | https://CRAN.R‐project.org/package=shotGroups, Version 0.8.1 |
spatstat package | Cran.R | https://cran.r‐project.org/package=spatstat |
Other | ||
Mixer mill MM400 | Retsch | Cat # 20.745.0001 |
Grinding jar 10 ml | Retsch | Cat # 01.462.0236 |
Grinding jar 25 ml | Retsch | Cat # 01.462.0213 |
Adapter for reaction vials | Retsch | Cat # 22.008.0008 |
Glass beads, acid‐washed | Sigma | Cat # G8772 |
μ‐Slide 8‐well, glass bottom | Ibidi | Cat # 80827 |
Y04C Microfluidic Plate for Haploid Yeast | CellAsic / Sigma | Cat # Y04C‐02‐5PK |
Invitrogen NuPAGE 4 to 12%, Bis‐Tris, 20‐well | Invitrogen | Cat # WG1402BOX |
Invitrogen NuPAGE 4 to 12%, Bis‐Tris, 20‐well | Invitrogen | Cat # NP0322BOX |
Immobilon‐P PVDF membrane | Millipore | Cat # IPVH00010 |