Table 6.
Primer sequence, band length, total amplified bands, monomorphic, polymorphic, unique bands and percentage of polymorphism and efficiency of ISSR and SRAP analysis of three A. maurorum genotypes
| Primer Name | Primer sequence (5`----3`) | Band length (bp) | TAB | NMB | NPB | NUB | PPB | MBF | PIC | RP |
|---|---|---|---|---|---|---|---|---|---|---|
| ISSR markers | ||||||||||
| 49A | CAC ACA CAC ACA AG | 215–385 | 2 | 1 | 1 | – | 50% | 0.83 | 0.22 | 0.67 |
| HB-9 | CAC CAC CAC GC | 380–435 | 2 | 2 | – | – | – | 1.00 | 0.00 | 0.00 |
| HB-10 | GAG AGA GAG AGA CC | 280–470 | 2 | 1 | 1 | – | 50% | 0.83 | 0.22 | 0.67 |
| HB-11 | GTG TGT GTG TGT TGT CC | 460–810 | 2 | 1 | 1 | – | 50% | 0.83 | 0.22 | 0.67 |
| HB-13 | GAG GAG GAG C | 470–975 | 3 | 2 | 1 | – | 33.33% | 0.89 | 0.15 | 0.67 |
| Total | – | 11 | 7 | 4 | – | – | – | – | – | |
| Average | 200–900 | 2.2 | 1.4 | 0.8 | – | 36.36% | 0.88 | – | 0.53 | |
| DI of all ISSR primers = 0.16 | ||||||||||
| SRAP markers | ||||||||||
| ME1xEM7 |
F ME-1: GAGTCCAAACCGGATA R EM-7: GACTGCGTACGAATTCAA |
275–1500 | 6 | – | 6 | 3 | 100% | 0.50 | 0.45 | 4.02 |
| ME1xEM8 |
ME-1: GAGTCCAAACCGGATA EM-8: CTGCGTACGAATTCAC |
320–680 | 4 | 2 | 2 | – | 50% | 0.83 | 0.22 | 1.36 |
| ME2xEM6 |
ME-2: TGA GTC CAA ACC GGA GC EM-6: GAC TGC GTA CGA ATT CC |
145–845 | 7 | 2 | 5 | 2 | 71.42% | 0.66 | 0.32 | 3.36 |
| ME2xEM7 |
ME-2: TGA GTC CAA ACC GGA GC Em-7: GACTGCGTACGAATTCAA |
135–185 | 3 | 2 | 1 | 1 | 33.33% | 0.78 | 0.15 | 0.66 |
| ME5xEM6 |
Me-5: TGAGTCCAAACCGGAAG EM-6: GAC TGC GTA CGA ATT CC |
110–200 | 3 | 1 | 2 | 1 | 66.66% | 0.66 | 0.30 | 1.34 |
| ME5xEM8 |
Me-5: TGAGTCCAAACCGGAAG EM-8: CTGCGTACGAATTCAC |
100–250 | 2 | 2 | – | – | – | 1.00 | 0 | 0 |
| Total | – | 25 | 9 | 16 | 7 | – | – | – | – | |
| Average | 100–1500 | 4.17 | 1.5 | 2.67 | 1.17 | 64% | 0.74 | – | 1.79 | |
| DI of all SRAP primers = 0.24 | ||||||||||
| Combined ISSR and SRAP | 36 | 16 | 20 | 7 | 55.55% | – | – | – | ||
TAB Total amplified bands, NMB Number of monomorphic bands, NPB Number of polymorphic bands; NUB Number of unique bands, PPB Percentage of polymorphic bands, MBF Mean of band frequency, PIC polymorphism information content, Rp Resolving power and DI Diversity index