TABLE 2.
Salmonella serovar | No. of isolates |
Accuracyb | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Chicken | Pork | Beef | Turkey | Multi-ingredient | Vegetable | Fish | Nuts, seeds | Egg | Shellfish | Fruit | Other poultry | Other meat | Grains, beans | Dairy | Game | Total | ||
Kentucky | 2,142 | 12 | 53 | 23 | 40 | 42 | 4 | 8 | 47 | 3 | 3 | 24 | 0 | 0 | 8 | 0 | 2,409 | 0.92 |
Enteritidis | 1,720 | 11 | 23 | 27 | 126 | 20 | 19 | 17 | 97 | 9 | 10 | 49 | 10 | 4 | 2 | 3 | 2,147 | 0.79 |
Typhimurium (O5–) | 1,086 | 118 | 50 | 26 | 56 | 11 | 12 | 0 | 1 | 4 | 0 | 2 | 14 | 0 | 1 | 10 | 1,391 | 0.88 |
Heidelberg | 735 | 18 | 19 | 370 | 19 | 2 | 2 | 4 | 63 | 1 | 1 | 30 | 1 | 0 | 1 | 1 | 1,267 | 0.74 |
Infantis | 619 | 240 | 56 | 19 | 69 | 27 | 6 | 8 | 5 | 10 | 4 | 0 | 13 | 13 | 2 | 7 | 1,098 | 0.84 |
Typhimurium | 267 | 270 | 145 | 83 | 86 | 51 | 21 | 23 | 8 | 9 | 8 | 38 | 21 | 10 | 14 | 4 | 1,058 | 0.60 |
Anatum | 45 | 434 | 196 | 28 | 54 | 59 | 8 | 17 | 0 | 3 | 19 | 0 | 5 | 4 | 10 | 1 | 883 | 0.64 |
Montevideo | 81 | 28 | 450 | 37 | 58 | 44 | 2 | 49 | 4 | 3 | 16 | 1 | 4 | 1 | 8 | 1 | 787 | 0.66 |
Newport | 49 | 29 | 233 | 24 | 31 | 198 | 64 | 45 | 1 | 23 | 26 | 2 | 5 | 20 | 7 | 6 | 763 | 0.71 |
Saintpaul | 108 | 63 | 11 | 394 | 11 | 27 | 6 | 13 | 0 | 19 | 5 | 1 | 2 | 1 | 4 | 0 | 665 | 0.76 |
Schwarzengrund | 411 | 28 | 28 | 137 | 30 | 4 | 11 | 5 | 0 | 0 | 0 | 3 | 0 | 2 | 0 | 3 | 662 | 0.80 |
Derby | 68 | 349 | 17 | 43 | 9 | 7 | 7 | 7 | 0 | 7 | 2 | 0 | 2 | 2 | 1 | 0 | 521 | 0.77 |
Weltevreden | 0 | 1 | 2 | 0 | 17 | 38 | 167 | 19 | 0 | 122 | 14 | 0 | 4 | 1 | 2 | 0 | 387 | 0.47 |
Agona | 21 | 88 | 45 | 106 | 36 | 21 | 7 | 18 | 0 | 6 | 23 | 0 | 0 | 2 | 2 | 2 | 377 | 0.57 |
Mbandaka | 85 | 25 | 37 | 2 | 61 | 18 | 8 | 39 | 9 | 3 | 30 | 1 | 1 | 7 | 2 | 2 | 330 | 0.48 |
Reading | 4 | 26 | 23 | 221 | 7 | 10 | 0 | 6 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 299 | 0.89 |
Dublin | 1 | 1 | 258 | 0 | 10 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 2 | 0 | 10 | 0 | 284 | 0.97 |
Thompson | 135 | 2 | 6 | 6 | 9 | 20 | 16 | 15 | 20 | 9 | 26 | 4 | 2 | 5 | 2 | 3 | 280 | 0.54 |
Braenderup | 84 | 13 | 14 | 0 | 13 | 98 | 5 | 2 | 31 | 6 | 2 | 1 | 0 | 5 | 0 | 2 | 276 | 0.44 |
Johannesburg | 29 | 158 | 7 | 2 | 9 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 0 | 1 | 211 | 0.80 |
Total | 7,690 | 1,914 | 1,673 | 1,548 | 751 | 698 | 366 | 295 | 286 | 237 | 190 | 157 | 89 | 78 | 76 | 47 | 16,095 | 0.71c |
Rows are ordered by decreasing totals.
Accuracy refers to the classification success of a given isolate to food source based on its AMR gene profile within the random forest analysis.
Average accuracy of classification within the random forest analyses.