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. Author manuscript; available in PMC: 2022 Aug 1.
Published in final edited form as: J Food Prot. 2020 Feb 1;83(2):295–304. doi: 10.4315/0362-028X.JFP-19-310

TABLE 2.

Number of Salmonella isolates across various food categories for the 20 most abundant Salmonella serovarsa

Salmonella serovar No. of isolates
Accuracyb
Chicken Pork Beef Turkey Multi-ingredient Vegetable Fish Nuts, seeds Egg Shellfish Fruit Other poultry Other meat Grains, beans Dairy Game Total
Kentucky 2,142 12 53   23   40   42 4  8 47  3  3   24   0   0   8   0   2,409 0.92
Enteritidis 1,720 11 23   27 126   20 19   17 97  9   10   49 10   4   2   3   2,147 0.79
Typhimurium (O5–) 1,086 118 50   26   56   11 12  0 1  4  0  2 14   0   1 10   1,391 0.88
Heidelberg    735 18 19    370   19  2 2  4 63  1  1   30   1   0   1   1   1,267 0.74
Infantis    619 240 56   19   69   27 6  8  5   10  4  0 13 13   2   7   1,098 0.84
Typhimurium    267 270 145   83   86   51 21   23 8  9  8   38 21 10 14   4   1,058 0.60
Anatum   45 434 196   28   54   59 8   17 0  3   19  0   5   4 10   1   883 0.64
Montevideo   81 28 450   37   58   44 2   49 4  3   16  1   4   1   8   1   787 0.66
Newport   49 29 233   24   31 198   64   45  1   23   26  2   5 20   7   6   763 0.71
Saintpaul    108 63 11    394   11   27 6   13 0   19  5  1   2   1   4   0   665 0.76
Schwarzengrund    411 28 28    137   30  4 11  5 0  0  0  3   0   2   0   3   662 0.80
Derby   68 349 17   43  9  7 7  7 0  7  2  0   2   2   1   0   521 0.77
Weltevreden     0 1 2     0   17   38 167   19 0 122   14  0   4   1   2   0   387 0.47
Agona   21 88 45    106   36   21 7   18 0  6   23  0   0   2   2   2   377 0.57
Mbandaka   85 25 37     2   61   18 8   39 9  3   30  1   1   7   2   2   330 0.48
Reading     4 26 23    221  7   10 0  6 0  0  0  0   1   0   0   1   299 0.89
Dublin     1 1 258     0   10  0 0  0 0  0  1  1   2   0 10   0   284 0.97
Thompson   135 2 6     6  9   20 16   15 20  9   26  4   2   5   2   3   280 0.54
Braenderup   84 13 14     0   13   98 5  2 31  6  2  1   0   5   0   2   276 0.44
Johannesburg   29 158 7     2  9  1 1  0 0  0  0  0   2   1   0   1   211 0.80
 Total 7,690 1,914 1,673 1,548 751 698 366 295 286 237 190 157 89 78 76 47 16,095   0.71c
a

Rows are ordered by decreasing totals.

b

Accuracy refers to the classification success of a given isolate to food source based on its AMR gene profile within the random forest analysis.

c

Average accuracy of classification within the random forest analyses.