TABLE 3.
Exon-level cis-eQTLs on chromosome 15 for hippocampus and striatum
| Region | SNP | Name | Feature | Start (bp) | Length | P Value | FDR |
|---|---|---|---|---|---|---|---|
| Striatum | rs264203947 | Zhx2 | Exon 3 | 57821111 | 2641 | 3.00E-26 | 3.44E-20 |
| rs264203947 | Zhx2 | Intron 1 | 57695787 | 66859 | 2.73E-24 | 3.10E-18 | |
| rs264203947 | Zhx2 | Exon 4 | 57838591 | 1242 | 1.00E-22 | 9.07E-17 | |
| rs264203947 | Zhx2 | Intron 3 | 57823752 | 14839 | 7.76E-16 | 3.53E-10 | |
| Hippocampus | rs264203947 | Zhx2 | Intron 1 | 57695787 | 66859 | 1.71E-14 | 2.92E-08 |
| rs264203947 | Zhx2 | Exon 3 | 57821111 | 2641 | 3.95E-14 | 4.08E-08 | |
| rs264203947 | Zhx2 | Exon 4 | 57838591 | 1242 | 2.04E-11 | 8.70E-06 | |
| rs264203947 | Zhx2 | Intron 3 | 57823752 | 14839 | 3.10E-08 | 0.004925 |
bp, base pair; SNP, single nucleotide polymorphism.
Exon-level cis-eQTLs for Zhx2 on (FDR < 0.05) were conducted in 64 F2 mice (16 per sex per treatment), and analysis included sex, RNA extraction batch, and treatment as covariates.