Table 2.
List of most abundant (> 0.1%) bacterial protein groups (PGs) with fold changes (FC) > 1.5 with functional annotations, KEGG EC- and KO-numbers and Pfam accession numbers.
| FC | Functional role | Functional subrole | Functional description | EC | KO | PFAM |
|---|---|---|---|---|---|---|
| 1.55 | Cellular processes and signaling | Posttranslational modification, protein turnover, chaperones | Heat shock 70 kDa protein | – | ko:K04043 | PF00012 |
| 1.86 | Information storage and processing | Transcription | Transcriptional regulator, LuxR family | – | ko:K13041 | PF00196, PF00072 |
| 1.78 | Information storage and processing | Replication, recombination and repair | Putative exonuclease SbcCD, C subunit | – | ko:K03546 | PF13476, PF13558 |
| 1.75 | Information storage and processing | Translation, ribosomal structure and biogenesis | This protein promotes the binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis | ko:K02358 | PF00009 | |
| 1.66 | Information storage and processing | Replication, recombination and repair | RNA helicase | 3.6.4.13 | ko:K12823 | PF00270, PF00271 |
| 3.76 | Metabolism | Metabolism - not specified | Reduction of activated sulfate into sulfite | 1.8.4.10 | ko:K00390 | PF01507 |
| 2.95 | Metabolism | Amino acid transport and metabolism | ABC-type branched-chain amino acid transport systems, periplasmic component | – | ko:K11959 | PF13433 |
| 2.87 | Metabolism | Coenzyme transport and metabolism | Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane Porphobilinogen deaminase | 2.5.1.61 | ko:K01749 | PF01379 |
| 2.73 | Metabolism | Amino acid transport and metabolism | Argininosuccinate synthase | 6.3.4.5 | ko:K01940 | PF00764 |
| 2.30 | Metabolism | Carbohydrate transport and metabolism | Ribulose-1,5-bisphosphate carboxylase-oxygenase (RuBisCO) pathway | 4.1.1.39 | ko:K01601 | PF00016 |
| 2.29 | Metabolism | Nucleotide transport and metabolism | Carbamoyl-phosphate synthetase ammonia chain | 6.3.5.5 | ko:K01955 | PF02786 |
| 1.95 | Metabolism | Lipid transport and metabolism | Catalyzes the conversion of acetate into acetyl-CoA | 6.2.1.1 | ko:K01895 | PF16177, PF00501 |
| 1.86 | Metabolism | Energy production and conversion | Isocitrate/isopropylmalate dehydrogenases | 1.1.1.42 | ko:K00031 | PF00180 |
| 1.66 | Metabolism | Energy production and conversion | Glutamate/Leucine/Phenylalanine/Valine dehydrogenase | – | – | PF00208 |
| 1.53 | Metabolism | Amino acid transport and metabolism | Cysteine synthase cystathionine beta—synthase family | 2.5.1.47 | ko:K01738 | PF00291 |
| 1.79 | Metabolism | Metabolism - not specified | Protease PfpI | – | – | PF01965 |