Experimental Models
|
Citrate‐treated peripheral blood (H. sapiens) |
Institute of Transfusion Medicine, University Medical Center Hamburg‐Eppendorf, Hamburg, Germany |
N/A |
EDTA‐treated peripheral blood (H. sapiens) |
Hamburger Gesundkohorte University Medical Center Hamburg‐Eppendorf, Hamburg, Germany |
N/A |
HEK293T/17 (H. sapiens) |
ATCC |
Cat#CRL‐11268; RRID:CVCL_1926 |
LCL 721.221 (H. sapiens) |
ATCC |
Cat#CRL‐1855; RRID:CVCL_6263 |
.221‐Cas9 |
Generated in this study |
N/A |
.221‐DR4/5KO |
Generated in this study |
N/A |
Raji (H. sapiens) |
Ragon Institute of MGH, MIT and Harvard, Cambridge, MA, USA |
RRID:CVCL_0511
|
Raji‐pSIP |
Generated in this study |
N/A |
Raji‐DR5++
|
Generated in this study |
N/A |
pNL4‐3 |
NIH HIV Reagent Program |
Cat#ARP‐114 |
pYK‐JRCSF |
NIH HIV Reagent Program |
Cat#ARP‐2708 |
HIV‐1 WITO |
Mary Carrington (National Cancer Institute); Ochsenbauer et al, 2012
|
N/A |
HIV‐1 CH198 |
Beatrice Hahn (University of Pennsylvania); Parrish et al, 2013
|
N/A |
HIV‐1 CH236 |
Beatrice Hahn (University of Pennsylvania); Fenton‐May et al, 2013
|
N/A |
Recombinant DNA
|
pLVX‐SIP |
Ragon Institute of MGH, MIT and Harvard, Cambridge, MA, USA; Dr. Thomas Pertel |
N/A |
pCMV‐VSV‐G |
Addgene |
Cat#8454; RRID:Addgene_8454 |
psPAX2 |
NIH HIV Reagent Program |
Cat#ARP‐11348; RRID:Addgene_12260 |
plentiCas9‐Blast |
Addgene |
Cat#52962; RRID:Addgene_52962 |
plentiGuide‐Puro encoding gRNA sequences |
GenScript |
Cat#SC1678 |
Antibodies
|
Mouse α‐human CD3 PerCP‐Cy5.5 (clone UCHT1) |
BioLegend |
Cat#300430; RRID:AB_893299 |
Mouse α‐human CD3 PE/Dazzle594 (clone UCHT1) |
BioLegend |
Cat#300450; RRID:AB_2563618 |
Mouse α‐human CD3 BV421 (clone UCHT1) |
BioLegend |
Cat#300434; RRID:AB_10962690 |
Mouse α‐human CD3 Pacific blue (clone UCHT1) |
BD Biosciences |
Cat#558117; RRID:AB_397038 |
Mouse α‐human CD4 APC (clone RPA‐T4) |
BD Biosciences |
Cat#555349, RRID:AB_398593 |
Mouse α‐human CD4 APC (clone OKT4) |
BioLegend |
Cat#317416; RRID:AB_571945 |
Mouse α‐human CD4 BV711 (clone RPA‐T4) |
BioLegend |
Cat#300558, RRID:AB_2564393 |
Mouse α‐human CD14 PerCP‐Cy5.5 (clone HCD14) |
BioLegend |
Cat#325622; RRID:AB_893250 |
Mouse α‐human CD16 BV785 (clone 3G8) |
BioLegend |
Cat#302046; RRID:AB_2563803 |
Mouse α‐human CD16 (clone 3G8) |
BioLegend |
Cat#302014; RRID:AB_314214 |
Mouse α‐human CD19 PerCP‐Cy5.5 (clone HIB19) |
BioLegend |
Cat#302230; RRID:AB_2073119 |
Mouse α‐human CD45 AF700 (clone 2D1) |
BioLegend |
Cat#368514; RRID:AB_2566374 |
Mouse α‐human CD45 BV605 (clone 2D1) |
BioLegend |
Cat#368524; RRID:AB_2715826 |
Mouse α‐human CD45 PerCP‐Cy5.5 (clone 2D1) |
BioLegend |
Cat#368503; RRID:AB_2566351 |
Mouse α‐human CD56 BUV395 (clone NCAM16.2) |
BD Biosciences |
Cat#563554; RRID:AB_2687886 |
Mouse α‐human CD57 PE/Dazzle594 (clone HNK‐1) |
BioLegend |
Cat#359620; RRID:AB_2564063 |
Mouse α‐human CD107a BV510 (clone H4A3) |
BioLegend |
Cat#328632; RRID:AB_2562648 |
Mouse α‐human KIR2DL1/S5 FITC (clone 143211) |
R&D Systems |
Cat#FAB1844F‐100; RRID:AB_2130402 |
Mouse α‐human KIR2DL2/L3/S2 BV711 (clone DX27) |
BD Biosciences |
Cat#745442; RRID:AB_2742987 |
Human α‐human NKG2C PE (clone REA205) |
Miltenyi Biotec |
Cat#130‐103‐635; RRID:AB_2655394 |
Mouse α‐human KIR3DL1 BV421 (clone DX9) |
BioLegend |
Cat#312714; RRID:AB_2561652 |
Mouse α‐human NKG2A PE‐Cy7 (clone Z199) |
Beckman Coulter |
Cat#B10246; RRID:AB_2687887 |
Mouse α‐human CD253 (TRAIL) APC (clone RIK‐2.1) |
Miltenyi Biotec |
Cat#130‐097‐314; RRID:AB_2656681 |
Mouse α‐human CD253 (TRAIL) (clone RIK‐2) |
BioLegend |
Cat#308214; RRID:AB_2814155 |
Mouse α‐human TRAIL‐R1 (DR4) (clone HS101) |
AdipoGen |
Cat#AG‐20B‐0022PF; RRID:AB_2490215 |
Mouse α‐human CD261 (DR4) Biotin (clone DJR1) |
Miltenyi Biotec |
Cat#130‐109‐084; RRID:AB_2656741 |
Mouse α‐human TRAIL‐R2 (DR5) (clone HS201) |
AdipoGen |
Cat#AG‐20B‐0023; RRID:AB_2490218 |
Mouse α‐human TRAIL‐R2 (DR5) (clone HS201) |
AdipoGen |
Cat#AG‐20B‐0023PF; RRID:AB_2490221 |
Mouse α‐human CD262 (DR5) Biotin (clone DJR2‐4) |
Miltenyi Biotec |
Cat#130‐097‐303; RRID:AB_2656745 |
α‐human TRAIL‐R3 (DcR1, CD263) (polyclonal Goat IgG) |
R&D Systems |
Cat#AF630; RRID:AB_355488 |
Mouse α‐human CD314 (NKG2D) (clone 1D11) |
BioLegend |
Cat#320814; RRID:AB_2561488 |
Mouse α‐human CD314 (NKG2D) PE (clone 1D11) |
BioLegend |
Cat#320806; RRID:AB_492960 |
Mouse α‐human CD335 (NKp46) (clone 9E2) |
Miltenyi Biotec |
Cat#130‐094‐271; RRID:AB_10828456 |
Mouse α‐human CD335 (NKp46) FITC (clone 9E2) |
BioLegend |
Cat#331922; RRID:AB_2561965 |
Mouse α‐human HIV‐1 core antigen FITC (clone KC57) |
Beckman Coulter |
Cat#6604665 |
Mouse α‐human p38 MAPK PE (clone 36/p38) |
BD Biosciences |
Cat#612565; RRID:AB_399856 |
Mouse α‐human PLC‐γ2 PE (clone K86‐689.37) |
BD Biosciences |
Cat#558490; RRID:AB_647226 |
Mouse α‐human Syk PE (clone I120‐722) |
BD Biosciences |
Cat#558529, RRID:AB_647247 |
Mouse α‐human Akt PE (clone M89‐61) |
BD Biosciences |
Cat#560378; RRID:AB_1645328 |
Mouse IgG1 Isotype Control (clone 15H6) |
AdipoGen |
Cat#AG‐35B‐0003PF |
Mouse IgG1, κ Isotype Ctrl (clone MOPC‐21) |
BioLegend |
Cat#400153 |
α‐goat IgG PE (polyclonal donkey IgG) |
R&D Systems |
Cat#F0107; RRID:AB_573123 |
Human Gamma Globulin |
ThermoFisher Scientific |
Cat#31879; RRID:AB_2532171 |
Oligonucleotides and other sequence‐based reagents
|
gRNA 5’ATAGTCCTGTCCATATTTGC3‘ |
GenScript |
Cat# SC1678 |
gRNA 5’GCGGGGAGGATTGAACCACG3‘ |
GenScript |
Cat# SC1678 |
Chemicals, Enzymes and other reagents
|
BD CellFIX (10x concentrate) |
BD Biosciences |
Cat#340181; RRID: AB_2868724 |
BD Phosflow Fix Buffer I |
BD Biosciences |
Cat#557870; RRID: AB_2869102 |
BD Phosflow Perm Buffer III |
BD Biosciences |
Cat#558050; RRID: AB_2869118 |
Benzonase Nuclease, Purity >90% |
Merck‐Millipore |
Cat#71205‐3 |
Benzonase Nuclease, Purity > 99% |
Merck‐Millipore |
Cat#70664‐3 |
Blasticidin |
InvivoGen |
Cat#ant‐bl‐1 |
CellTracker Violet BMQC Dye |
Invitrogen |
Cat#C10094
|
CellTracker Orange CMTMR Dye |
Invitrogen |
Cat#C2927 |
CellTrace Far Red |
Invitrogen |
Cat#C34564
|
Immunocult Human CD3/CD28 T Cell Activator |
Stemcell |
Cat#10971; RRID:AB_2827806 |
Lenti‐X Concentrator |
Clontech Laboratories Inc. |
Cat#631232 |
Lipofectamine 3000 |
Invitrogen |
Cat#L3000‐150 |
LIVE/DEAD Fixable Blue Dead Cell Stain Kit |
Invitrogen |
Cat#L34962
|
LIVE/DEAD Fixable Near‐IR Dead Cell Stain Kit |
Invitrogen |
Cat#L34976
|
Precision Count Beads |
BioLegend |
Cat#424902 |
Puromycin dihydrochloride |
Sigma‐Aldrich |
Cat#P7255 |
Recombinant human DcR1 protein |
Abcam |
Cat#ab276266 |
Recombinant human DR4 protein |
Abcam |
Cat#ab641 |
Recombinant human DR5 protein |
Abcam |
Cat#ab243777 |
Recombinant human IL‐2 |
PeproTech GmbH |
Cat#200‐02 |
Recombinant human IL‐15 |
PeproTech GmbH |
Cat#200‐15 |
Recombinant human Osteoprotegerin protein |
Abcam |
Cat#ab182688 |
Streptavidin BV421 |
BioLegend |
Cat#405226 |
Streptavidin PE |
BioLegend |
Cat#405204 |
Software
|
Flowjo v10 |
BD Life Sciences |
RRID:SCR_008520; https://www.flowjo.com/
|
GraphPad Prism 9 |
GraphPad Software |
RRID:SCR_002798; https://www.graphpad.com/
|
Other
|
BD Cytofix/Cytoperm Fixation/Permeabilization Kit |
BD Biosciences |
Cat#554714; RRID:AB_2869008 |
DNeasy Blood and Tissue Kit |
QIAGEN |
Cat#69506 |
EasySep Human CD4 Positive Selection Kit II |
Stemcell |
Cat#17852 |
EasySep Human CD4+ T Cell Enrichment Kit |
Stemcell |
Cat#19052 |
EasySep Human NK Cell Enrichment Kit |
Stemcell |
Cat#19055 |
Granzyme B Human ELISA Kit |
ThermoFisher Scientific |
Cat#BMS2027 |
IFN gamma Human ELISA Kit |
ThermoFisher Scientific |
Cat#EHIFNG |
MACS Marker Screen, human |
Miltenyi Biotec |
Cat#130‐110‐055 |