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. 2022 Jun 27;23(8):e54133. doi: 10.15252/embr.202154133
Reagent/Resource Reference or Source Identifier or Catalog Number
Experimental Models
Citrate‐treated peripheral blood (H. sapiens) Institute of Transfusion Medicine, University Medical Center Hamburg‐Eppendorf, Hamburg, Germany N/A
EDTA‐treated peripheral blood (H. sapiens) Hamburger Gesundkohorte University Medical Center Hamburg‐Eppendorf, Hamburg, Germany N/A
HEK293T/17 (H. sapiens) ATCC Cat#CRL‐11268; RRID:CVCL_1926
LCL 721.221 (H. sapiens) ATCC Cat#CRL‐1855; RRID:CVCL_6263
.221‐Cas9 Generated in this study N/A
.221‐DR4/5KO Generated in this study N/A
Raji (H. sapiens) Ragon Institute of MGH, MIT and Harvard, Cambridge, MA, USA RRID:CVCL_0511
Raji‐pSIP Generated in this study N/A
Raji‐DR5++ Generated in this study N/A
pNL4‐3 NIH HIV Reagent Program Cat#ARP‐114
pYK‐JRCSF NIH HIV Reagent Program Cat#ARP‐2708
HIV‐1 WITO Mary Carrington (National Cancer Institute); Ochsenbauer et al, 2012 N/A
HIV‐1 CH198 Beatrice Hahn (University of Pennsylvania); Parrish et al, 2013 N/A
HIV‐1 CH236 Beatrice Hahn (University of Pennsylvania); Fenton‐May et al, 2013 N/A
Recombinant DNA
pLVX‐SIP Ragon Institute of MGH, MIT and Harvard, Cambridge, MA, USA; Dr. Thomas Pertel N/A
pCMV‐VSV‐G Addgene Cat#8454; RRID:Addgene_8454
psPAX2 NIH HIV Reagent Program Cat#ARP‐11348; RRID:Addgene_12260
plentiCas9‐Blast Addgene Cat#52962; RRID:Addgene_52962
plentiGuide‐Puro encoding gRNA sequences GenScript Cat#SC1678
Antibodies
Mouse α‐human CD3 PerCP‐Cy5.5 (clone UCHT1) BioLegend Cat#300430; RRID:AB_893299
Mouse α‐human CD3 PE/Dazzle594 (clone UCHT1) BioLegend Cat#300450; RRID:AB_2563618
Mouse α‐human CD3 BV421 (clone UCHT1) BioLegend Cat#300434; RRID:AB_10962690
Mouse α‐human CD3 Pacific blue (clone UCHT1) BD Biosciences Cat#558117; RRID:AB_397038
Mouse α‐human CD4 APC (clone RPA‐T4) BD Biosciences Cat#555349, RRID:AB_398593
Mouse α‐human CD4 APC (clone OKT4) BioLegend Cat#317416; RRID:AB_571945
Mouse α‐human CD4 BV711 (clone RPA‐T4) BioLegend Cat#300558, RRID:AB_2564393
Mouse α‐human CD14 PerCP‐Cy5.5 (clone HCD14) BioLegend Cat#325622; RRID:AB_893250
Mouse α‐human CD16 BV785 (clone 3G8) BioLegend Cat#302046; RRID:AB_2563803
Mouse α‐human CD16 (clone 3G8) BioLegend Cat#302014; RRID:AB_314214
Mouse α‐human CD19 PerCP‐Cy5.5 (clone HIB19) BioLegend Cat#302230; RRID:AB_2073119
Mouse α‐human CD45 AF700 (clone 2D1) BioLegend Cat#368514; RRID:AB_2566374
Mouse α‐human CD45 BV605 (clone 2D1) BioLegend Cat#368524; RRID:AB_2715826
Mouse α‐human CD45 PerCP‐Cy5.5 (clone 2D1) BioLegend Cat#368503; RRID:AB_2566351
Mouse α‐human CD56 BUV395 (clone NCAM16.2) BD Biosciences Cat#563554; RRID:AB_2687886
Mouse α‐human CD57 PE/Dazzle594 (clone HNK‐1) BioLegend Cat#359620; RRID:AB_2564063
Mouse α‐human CD107a BV510 (clone H4A3) BioLegend Cat#328632; RRID:AB_2562648
Mouse α‐human KIR2DL1/S5 FITC (clone 143211) R&D Systems Cat#FAB1844F‐100; RRID:AB_2130402
Mouse α‐human KIR2DL2/L3/S2 BV711 (clone DX27) BD Biosciences Cat#745442; RRID:AB_2742987
Human α‐human NKG2C PE (clone REA205) Miltenyi Biotec Cat#130‐103‐635; RRID:AB_2655394
Mouse α‐human KIR3DL1 BV421 (clone DX9) BioLegend Cat#312714; RRID:AB_2561652
Mouse α‐human NKG2A PE‐Cy7 (clone Z199) Beckman Coulter Cat#B10246; RRID:AB_2687887
Mouse α‐human CD253 (TRAIL) APC (clone RIK‐2.1) Miltenyi Biotec Cat#130‐097‐314; RRID:AB_2656681
Mouse α‐human CD253 (TRAIL) (clone RIK‐2) BioLegend Cat#308214; RRID:AB_2814155
Mouse α‐human TRAIL‐R1 (DR4) (clone HS101) AdipoGen Cat#AG‐20B‐0022PF; RRID:AB_2490215
Mouse α‐human CD261 (DR4) Biotin (clone DJR1) Miltenyi Biotec Cat#130‐109‐084; RRID:AB_2656741
Mouse α‐human TRAIL‐R2 (DR5) (clone HS201) AdipoGen Cat#AG‐20B‐0023; RRID:AB_2490218
Mouse α‐human TRAIL‐R2 (DR5) (clone HS201) AdipoGen Cat#AG‐20B‐0023PF; RRID:AB_2490221
Mouse α‐human CD262 (DR5) Biotin (clone DJR2‐4) Miltenyi Biotec Cat#130‐097‐303; RRID:AB_2656745
α‐human TRAIL‐R3 (DcR1, CD263) (polyclonal Goat IgG) R&D Systems Cat#AF630; RRID:AB_355488
Mouse α‐human CD314 (NKG2D) (clone 1D11) BioLegend Cat#320814; RRID:AB_2561488
Mouse α‐human CD314 (NKG2D) PE (clone 1D11) BioLegend Cat#320806; RRID:AB_492960
Mouse α‐human CD335 (NKp46) (clone 9E2) Miltenyi Biotec Cat#130‐094‐271; RRID:AB_10828456
Mouse α‐human CD335 (NKp46) FITC (clone 9E2) BioLegend Cat#331922; RRID:AB_2561965
Mouse α‐human HIV‐1 core antigen FITC (clone KC57) Beckman Coulter Cat#6604665
Mouse α‐human p38 MAPK PE (clone 36/p38) BD Biosciences Cat#612565; RRID:AB_399856
Mouse α‐human PLC‐γ2 PE (clone K86‐689.37) BD Biosciences Cat#558490; RRID:AB_647226
Mouse α‐human Syk PE (clone I120‐722) BD Biosciences Cat#558529, RRID:AB_647247
Mouse α‐human Akt PE (clone M89‐61) BD Biosciences Cat#560378; RRID:AB_1645328
Mouse IgG1 Isotype Control (clone 15H6) AdipoGen Cat#AG‐35B‐0003PF
Mouse IgG1, κ Isotype Ctrl (clone MOPC‐21) BioLegend Cat#400153
α‐goat IgG PE (polyclonal donkey IgG) R&D Systems Cat#F0107; RRID:AB_573123
Human Gamma Globulin ThermoFisher Scientific Cat#31879; RRID:AB_2532171
Oligonucleotides and other sequence‐based reagents
gRNA 5’ATAGTCCTGTCCATATTTGC3‘ GenScript Cat# SC1678
gRNA 5’GCGGGGAGGATTGAACCACG3‘ GenScript Cat# SC1678
Chemicals, Enzymes and other reagents
BD CellFIX (10x concentrate) BD Biosciences Cat#340181; RRID: AB_2868724
BD Phosflow Fix Buffer I BD Biosciences Cat#557870; RRID: AB_2869102
BD Phosflow Perm Buffer III BD Biosciences Cat#558050; RRID: AB_2869118
Benzonase Nuclease, Purity >90% Merck‐Millipore Cat#71205‐3
Benzonase Nuclease, Purity > 99% Merck‐Millipore Cat#70664‐3
Blasticidin InvivoGen Cat#ant‐bl‐1
CellTracker Violet BMQC Dye Invitrogen Cat#C10094
CellTracker Orange CMTMR Dye Invitrogen Cat#C2927
CellTrace Far Red Invitrogen Cat#C34564
Immunocult Human CD3/CD28 T Cell Activator Stemcell Cat#10971; RRID:AB_2827806
Lenti‐X Concentrator Clontech Laboratories Inc. Cat#631232
Lipofectamine 3000 Invitrogen Cat#L3000‐150
LIVE/DEAD Fixable Blue Dead Cell Stain Kit Invitrogen Cat#L34962
LIVE/DEAD Fixable Near‐IR Dead Cell Stain Kit Invitrogen Cat#L34976
Precision Count Beads BioLegend Cat#424902
Puromycin dihydrochloride Sigma‐Aldrich Cat#P7255
Recombinant human DcR1 protein Abcam Cat#ab276266
Recombinant human DR4 protein Abcam Cat#ab641
Recombinant human DR5 protein Abcam Cat#ab243777
Recombinant human IL‐2 PeproTech GmbH Cat#200‐02
Recombinant human IL‐15 PeproTech GmbH Cat#200‐15
Recombinant human Osteoprotegerin protein Abcam Cat#ab182688
Streptavidin BV421 BioLegend Cat#405226
Streptavidin PE BioLegend Cat#405204
Software
Flowjo v10 BD Life Sciences RRID:SCR_008520; https://www.flowjo.com/
GraphPad Prism 9 GraphPad Software RRID:SCR_002798; https://www.graphpad.com/
Other
BD Cytofix/Cytoperm Fixation/Permeabilization Kit BD Biosciences Cat#554714; RRID:AB_2869008
DNeasy Blood and Tissue Kit QIAGEN Cat#69506
EasySep Human CD4 Positive Selection Kit II Stemcell Cat#17852
EasySep Human CD4+ T Cell Enrichment Kit Stemcell Cat#19052
EasySep Human NK Cell Enrichment Kit Stemcell Cat#19055
Granzyme B Human ELISA Kit ThermoFisher Scientific Cat#BMS2027
IFN gamma Human ELISA Kit ThermoFisher Scientific Cat#EHIFNG
MACS Marker Screen, human Miltenyi Biotec Cat#130‐110‐055