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. 2022 May 6;46(7):1109–1127. doi: 10.1002/cbin.11807

Table 1.

Designed primers for genotyping of the studied SNPs

Genes/SNPs Function of SNPs Genotyping methods Primer sequences Annealing temp (°C) RE Product size (bp)
TNFA
rs361525 G>A Promoteric RFLP‐PCR F: ATCTGGAGGAAGCGGTAGTG 55 MspI G: 132 + 20
R: AGAAGACCCCCCTCGGAACC A: 152
IL1RN
rs419598 T>C Synonymous RFLP‐PCR F: TTCCGTCTCTTGAAACTTCTACCT 56 MspI T: 314
R: AAAGACCCAACAAGGATTAGGACAT C: 157
IL6R
rs2228145 A>C Missense RFLP‐PCR F: GTTAAGCTTGTCAAATGGCCTGTT 55 HinfI A: 258
R: CAGAGGAGCGTTCCGAAGG C: 188 + 170
IL6
rs2069827 G>T Promoteric ARMS‐PCR F (G‐allele): CAACTGAGGTCACTGTTTTAGCG 62 G or T: 150
F (T‐allele): CAACTGAGGTCACTGTTTTAGCT
R (Common): GACAGCTCTGAGATGGCTTCA

Abbreviations: ARMS‐PCR, amplification refractory mutation system polymerase chain reaction; bp, base pair; F, forward; R, reverse; RE, restriction enzyme; RFLP‐PCR, restriction fragment length polymorphism polymerase chain reaction; SNP, single‐nucleotide polymorphism.