Table 1.
Genes/SNPs | Function of SNPs | Genotyping methods | Primer sequences | Annealing temp (°C) | RE | Product size (bp) |
---|---|---|---|---|---|---|
TNFA | ||||||
rs361525 G>A | Promoteric | RFLP‐PCR | F: ATCTGGAGGAAGCGGTAGTG | 55 | MspI | G: 132 + 20 |
R: AGAAGACCCCCCTCGGAACC | A: 152 | |||||
IL1RN | ||||||
rs419598 T>C | Synonymous | RFLP‐PCR | F: TTCCGTCTCTTGAAACTTCTACCT | 56 | MspI | T: 314 |
R: AAAGACCCAACAAGGATTAGGACAT | C: 157 | |||||
IL6R | ||||||
rs2228145 A>C | Missense | RFLP‐PCR | F: GTTAAGCTTGTCAAATGGCCTGTT | 55 | HinfI | A: 258 |
R: CAGAGGAGCGTTCCGAAGG | C: 188 + 170 | |||||
IL6 | ||||||
rs2069827 G>T | Promoteric | ARMS‐PCR | F (G‐allele): CAACTGAGGTCACTGTTTTAGCG | 62 | ‐ | G or T: 150 |
F (T‐allele): CAACTGAGGTCACTGTTTTAGCT | ||||||
R (Common): GACAGCTCTGAGATGGCTTCA |
Abbreviations: ARMS‐PCR, amplification refractory mutation system polymerase chain reaction; bp, base pair; F, forward; R, reverse; RE, restriction enzyme; RFLP‐PCR, restriction fragment length polymorphism polymerase chain reaction; SNP, single‐nucleotide polymorphism.