Table 5. The results of docking analysis between metalloprotease of P. polymyxa (as a protein) and ligands involved in biofilm formation in S. aureus and P. aeruginosa .
Strain | Ligand | Binding energy (kcal/mol) | Possible amino acids involved in the interaction |
S. aureus | PSM | -181 | Gly, His, Glu, Tyr, Asp, Asn, Val, |
P. aeruginosa | Sodium alginate | -123 | Gln, Gly, Glu, |
Lectin | -189 | Gly, Asn, Tyr, Trp, Leu |