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. 2022 Aug 4;7(8):1141–1150. doi: 10.1038/s41564-022-01179-9

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© The Author(s) 2022

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 9 — a, Venn diagram showing the commonly down-regulated genes. b–i, Expression levels of the commonly down-regulated genes in GmL07 and CmL05 after the improvement of host phenotypes. (b) Transporter genes. (c) Carbohydrate metabolism genes. (d) Amino acid metabolism genes. (e) Lipid metabolism genes. (f) Quorum sensing genes. (g) Transcription factor genes. (h) Biofilm (= Curli fimbriae) formation genes. (i) Other genes. The inset figure at the bottom right represents the explanations of the elements in the plots. The numbers of the biological replicates and exact FDR q-values are provided with the source data.

Source data