Table 2.
Summary of phylogenetic information for the different analyses in this study.
| Genus | Locus1 |
Number of sites (including gaps)2
|
Model selection3
|
|||||
|---|---|---|---|---|---|---|---|---|
| Total | Conserved | Variable | Informative | BI unique site patterns | IQ-TREE (BIC) | BI (AIC) | ||
| Fusarium | rpb1 | 1 774 | 1 134 | 639 | 568 | 713 | TNe+I+G4 | SYM+I+G |
| rpb2 | 1 657 | 1 085 | 572 | 535 | 592 | TIM2e+I+G4 | SYM+I+G | |
| tef1 | 517 | 217 | 285 | 245 | 348 | TIM2e+G4 | GTR+G | |
| Combined | 3 948 | 2 436 | 1 496 | 1 348 | 1 653 | - | - | |
| Neocosmospora | ITS | 464 | 333 | 128 | 99 | 180 | TNe+R3 | GTR+I+G |
| rpb1 | 1 588 | 1 151 | 437 | 319 | 435 | TIM3e+I+G4 | GTR+I+G | |
| rpb2 | 1 465 | 1 057 | 408 | 336 | 454 | TNe+I+G4 | GTR+I+G | |
| tef1 | 688 | 394 | 283 | 200 | 342 | TIM2+F+G4 | GTR+I+G | |
| Combined | 4 205 | 2 935 | 1 256 | 954 | 1 411 | - | - | |
| Fusicolla | acl1 | 866 | 454 | 382 | 201 | 298 | TNe+G4 | GTR+G |
| ITS | 516 | 391 | 110 | 56 | 123 | TIM2e+G4 | GTR+G | |
| LSU | 474 | 423 | 50 | 28 | 56 | K2P+I | GTR+G+I | |
| rpb2 | 1 702 | 1 220 | 482 | 290 | 415 | TIM2e+G4 | GTR+G+I | |
| tub2 | 482 | 299 | 175 | 109 | 177 | K2P+G4 | HKY+G | |
| Combined | 4 040 | 2 787 | 1 199 | 684 | 1 069 | - | - | |
1 acl1: ATP citrate lyase large subunit; LSU: 28S large subunit of the nrDNA; ITS: Internal transcribed spacer region of the nrDNA; tef1: partial translation elongation factor 1-alpha gene; rpb1: partial DNA-directed RNA polymerase II largest subunit gene; rpb2: partial DNA-directed RNA polymerase II second largest subunit gene; tub2: partial beta-tubulin gene.
2 BI: Bayesian inference.
3 BIC: Evolutionary model selected by ModelFinder in IQ-TREE; AIC: Evolutionary model selected by MrModeltest under the Akaike Information Criterion