Table 1.

Summary of sequence assembly after Illumina sequencing.

Sample	Raw reads	Clean reads	Clean bases	Q20 (%)	Q30 (%)	GC content (%)
CK_1	43,358,966	41,645,954	6.13G	98.03	94.52	56.11
CK_2	36,756,718	35,593,966	5.24G	98.44	95.53	56.21
CK_3	41,287,565	39,620,148	5.83G	98.12	94.75	56.02
JA_1	38,542,044	36,055,850	5.30G	98.01	94.48	54.93
JA_2	47,240,416	44,878,396	6.57G	97.61	93.82	54.85
JA_3	43,215,064	40,958,731	5.86G	97.82	94.21	54.32
NaCl_1	40,796,460	39,546,508	5.82G	98.02	94.51	54.23
NaCl_2	44,781,028	43,114,712	6.31G	97.64	93.79	54.37
NaCl_3	42,315,607	40,921,473	6.05G	97.86	94.23	54.64
JA+NaCl_1	40,502,286	38,959,102	5.72G	97.88	94.26	54.61
JA+NaCl_2	51,309,000	48,678,204	7.10G	97.37	93.23	54.88
JA+NaCl_3	43,286,918	41,847,269	6.19G	97.67	94.21	54.87

CK_1, CK_2 and CK_3: Control sample (three independent biological replicates).

JA_1, JA_2 and JA_3: 100 μM JA treated sample (three independent biological replicates).

NaCl_1, NaCl_2 and NaCl_3: 150 mM NaCl treated sample (three independent biological replicates).

JA+NaCl_1, JA+NaCl_2 and JA+NaCl_3: 100 μM JA +150 mM NaCl treated sample (three independent biological replicates).

Q20: The percentage of bases with a Phred value >20.

Q30: The percentage of bases with a Phred value >30.