Table 3.
Per-segment performance for TMB (transmembrane beta strands). *
| TMB (57/768) | |||||
|---|---|---|---|---|---|
| Recall (%) | Precision (%) | Qok (%) | Qnum (%) | Qtop (%) | |
| TMbed | 95.0 ± 4.3 | 99.2 ± 0.7 | 80.5 ± 11.4 | 88.1 ± 6.9 | 98.1 ± 3.8 |
| DeepTMHMM | 85.9 ± 6.6 | 92.5 ± 4.7 | 46.1 ± 7.6 | 74.3 ± 13.0 | 97.2 ± 4.4 |
| BOCTOPUS2 | 85.3 ± 9.2 | 96.6 ± 2.0 | 56.6 ± 18.9 | 71.2 ± 11.8 | 98.0 ± 2.0 |
| BetAware-Deep | 67.1 ± 6.5 | 62.2 ± 11.4 | 8.7 ± 5.3 | 60.9 ± 14.1 | 95.7 ± 5.4 |
| PRED-TMBB2 (MSA) | 85.4 ± 1.9 | 75.6 ± 4.8 | 18.4 ± 15.0 | 44.5 ± 26.7 | 95.9 ± 3.4 |
| PROFtmb | 78.2 ± 10.1 | 78.0 ± 6.9 | 20.2 ± 12.8 | 46.6 ± 11.7 | 97.2 ± 1.0 |
*Segment performance for transmembrane beta strand (TMB) prediction based on 57 beta barrel TMPs (β-TMP) with a total of 768 TMBs. Recall, Precision, Qok, Qnum, and Qtop were averaged over the five independent cross-validation test sets; error margins given for the 95% confidence interval (1.96*standard error); bold: best values for each column; italics: differences statistically significant with over 95% confidence (only computed between best and 2nd best)