Table 1.
Comparison between the PC-fu genome and other published B. rapa genome versions.
| Genome features | PC-fu | Purple pakchoi | NHCC001 | Chiifu (v3) |
|---|---|---|---|---|
| Genome assembly | ||||
| Assembled genome size (Mb) | 411.4 | 370.4 | 405.3 | 353.1 |
| GC content (%) | 37.68 | 37.13 | 36.83 | |
| Number of scaffolds | 2288 | 313 | 1301 | |
| Contig N50 (bp) | 4700 | 3813 | 4437 | |
| Scaffold N50 (bp) | 39 389 | 2820 | 2830 | 1498 |
| TE rate (% of genome) | 260.3 Mb (63.3%) | 180.3 Mb (48.68%) | 279.8 Mb (58.57%) | 163.8 Mb (46.4%) |
| BUSCO | ||||
| Missing core genes (%) | 0.80% | 1.10% | 0.93% | 1.60% |
| Genome annotation | ||||
| Protein-coding genes | 52 511 | 45 363 | 48 158 | 45 985 |
| Average gene length (bp) | 2220 | 1125 | 2119 | 1864 |
| Reference | This study | [16] | [17] | [18] |