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. 2022 Aug 7;60(1):1478–1490. doi: 10.1080/13880209.2022.2101671

Table 3.

Binding free energies and energy components are predicted by MM/GBSA (kcal/mol).

System name ΔEvdW ΔEelec ΔGGB ΔGSA ΔGbind
AKT1/7-Metho-2-met_isoflavone −35.687 −1.434 16.212 −4.588 −25.497
AKT1/Beta-sitosterol −63.367 −4.602 36.229 −7.615 −39.354
AKT1/Fumarine −47.073 −10.635 37.235 −5.103 −25.581
AKT1/Luteolin −36.229 −12.946 32.272 −4.649 −21.552
AKT1/Quercetin −33.796 −82.818 96.019 −4.891 −25.486
AKT1/Stigmasterol −51.843 −5.429 24.333 −6.085 −39.024
CASP3/Stigmasterol −50.238 −2.783 16.606 −6.095 −42.509
MAPK8/Fumarine −49.891 −48.479 70.778 −5.562 −33.157
PTGS2/Beta-sitosterol −49.129 −7.473 27.628 −5.840 −34.814
PTGS2/Fumarine −41.133 −66.329 85.504 −4.831 −26.788

ΔEvdW: van der Waals energy.

ΔEelec: electrostatic energy.

ΔGGB: electrostatic contribution to solvation.

ΔGSA: non-polar contribution to solvation.

ΔGbind: binding free energy.