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. 2022 Jul 26;12:954785. doi: 10.3389/fcimb.2022.954785

Table 2.

Identity rates of the genes from the identified strains with various validated or unvalidated Rickettsia spp.

Strains Gene gltA rrs ompA ompB sca4
Huaian-HF Size 1,290 bp 1,331 bp 575 bp 4,807 bp 3,035 bp
Highest Identity Rate 98.84% to R. peacockii strain Rustic; 99.92% to Candidatus R. principis (96% coverage) 99.32% to R. slovaca strain D-CWPP and R. rhipicephali strain HJ#5 95.37% to R. parkeri strains Atlantic Rainforest and Black Gap (80% coverage) 94.82% R. rhipicephali strain HJ#5 97.79% R. slovaca str. D-CWPP
Huaian-HFL Size 1,289 bp 1,331 bp 632 bp 4,856 bp 2,993 bp
Highest Identity Rate 99.77% to R. heilongjiangensis 054; 99.69% to R. japonica YH_M 99.92% and 100% to R. japonica YH_M and strain Shandong J71, respectively; 99.85% to R. heilongjiangensis 054 98.10% to R. heilongjiangensis strain CH8-1; 97.15% to R. japonica YH_M; 100% to various R. japonica strains Shandong J68 to J75 99.03% to R. heilongjiangensis 054; 98.65% to R. japonica YH_M 99.63% to R. heilongjiangensis 054; 99.50% to R. japonica YH_M
Huaian-RM Size 1,260 bp 1,331 bp 523 bp 4,842 bp 2,660 bp
Highest Identity Rate 99.60% to R. heilongjiangensis 054; 99.52% to R. japonica YH_M 99.70% to R. japonica YH_M; 99.77% to Candidatus R. longicornii isolate GD02 94.87% to R. heilongjiangensis 054; 100% to Candidatus R. longicornii and Candidatus R. jingxinensis isolate Rm1 98% to R. japonica strains HH-16 to 18 98.5% to R. japonica YH_M
Novel species Criteria Identity Rates (Fournier et al., 2003) <99.9% <99.8 <98.8 <99.2 <99.3