Table 2.

List of the top 44 upregulated DEGs, common to all pairwise comparisons between SEGAs and other brain tumors/cortical tubers, with a median fold change >= 10 and FDR/q-value < 0.05.

	SEGAs to TCGA astrocytomas	SEGAs to TCGA oligodendrogliomas	SEGAs to TCGA glioblastomas	SEGAs to gangliogliomas	SEGAs to cortical tubers
Gene ID	Fold change	Fold change	Fold change	Fold change	Fold change	Median fold change
HCRTR2	253.2	239.6	309.5	154.7	34.9	239.6
SFTA3	168.1	152.6	196.7	203.5	106.3	168.1
SPAN8	141.8	148.4	324.7	240.7	77.1	148.4
KCNK12	130.3	164.3	195.4	36.0	11.7	130.3
LHCGR	111.7	85.1	102.5	14.7	60.7	85.1
SLN	81.0	125.1	46.2	1082.1	39.3	81.0
HMX3	79.8	70.2	76.5	88.9	17.5	76.5
HMX2	51.1	55.0	58.1	83.5	14.9	55.0
SLC14A2	39.3	35.1	55.2	53.8	86.2	53.8
FRZB	69.6	48.1	41.1	47.0	11.7	47.0
IRF6	37.2	44.8	71.1	50.9	28.2	44.8
SIX3	30.3	18.1	43.0	71.1	75.5	43.0
TMPRSS2	29.3	25.2	41.9	116.8	57.3	41.9
TRIM63	35.4	52.2	32.2	35.8	7.1	35.4
TRDN	35.3	44.5	63.8	11.0	6.9	35.3
GPNMB	35.3	31.2	31.5	77.0	19.9	31.5
LOC148145	14.9	29.7	38.0	66.4	6.0	29.7
HGD	30.3	25.9	11.1	25.2	4.3	25.2
SLC39A2	24.1	30.5	16.7	30.3	11.0	24.1
FOLR1	18.5	13.5	18.1	162.6	56.1	18.5
SFRP1	18.3	18.6	33.9	18.0	8.1	18.3
ITIH1	18.1	18.3	9.0	26.6	10.0	18.1
TDGF1	17.9	30.8	43.6	15.1	7.7	17.9
LRRN4CL	8.9	22.9	7.2	39.5	16.2	16.2
LGR5	16.0	18.3	30.7	9.8	10.3	16.0
EOMES	15.7	13.5	16.1	6.2	46.4	15.7
GSTA1	16.1	18.6	13.9	15.4	8.5	15.4
SFRP4	8.9	11.4	16.6	15.0	31.0	15.0
WISP2	14.8	14.9	19.4	28.8	7.7	14.9
GPRC5A	16.8	11.6	11.7	47.4	14.7	14.7
HKDC1	17.6	11.0	21.5	14.7	10.6	14.7
GALNT5	11.4	14.6	12.6	16.7	61.9	14.6
SYPL2	10.6	15.8	13.7	16.7	8.5	13.7
TNNC1	13.4	14.6	9.3	16.6	8.2	13.4
KCP	13.2	11.7	10.9	15.5	12.9	12.9
ELSPBP1	12.8	10.9	7.6	14.2	13.2	12.8
VAX1	14.3	11.9	33.6	12.7	5.7	12.7
FGFBP2	9.7	12.6	8.4	81.9	31.4	12.6
IP6K3	8.7	12.5	9.6	13.8	16.4	12.5
TMEM200A	13.9	8.8	25.6	12.5	5.1	12.5
TTC39A	11.9	25.7	12.4	10.6	8.2	11.9
GPR1	20.7	11.1	6.3	18.5	8.6	11.1
F10	10.8	15.1	12.8	6.5	10.4	10.8
HORMAD2	10.2	10.9	10.0	5.5	4.3	10.0

^1.Genes highlighted in bold are TFs.