. 2022 Jun 2;21(8):1829–1841. doi: 10.1021/acs.jproteome.2c00020

Table 2. Correlation Coefficient (R) of Protein–Protein and Protein–Ligand BA Predictors on the Test Set of 100 Protein–Peptide Complexes^a.

method	R	MAE (kcal/mol)
PRODIGY	0.13	1.9
DFIRE	0.29	8.7
CP_PIE	–0.28	9.0
Kdeep*	0.32	10.7
RF-Score*	0.23	1.8
PPI-Affinity	0.55	1.1

Protein–ligand methods are marked with a star. The negative values of the correlation coefficients indicate that the corresponding method predicts unbinding free energy.

Table 2. Correlation Coefficient (R) of Protein–Protein and Protein–Ligand BA Predictors on the Test Set of 100 Protein–Peptide Complexesa.

Table 2. Correlation Coefficient (R) of Protein–Protein and Protein–Ligand BA Predictors on the Test Set of 100 Protein–Peptide Complexes^a.