Table 3.
Plant materials used for RNA-Seq and qRT-PCR analysis
| Set of RNA-Seq data | Variety | Sample ID and | Samples | Treatment | Platform | LibraryLayout | Accesion number | Data sources |
|---|---|---|---|---|---|---|---|---|
| Plant materials for RNA-Seq analysis | ||||||||
| 1 |
‘Feizixiao’ (27-year-old) |
CK1_1, CK1_2,CK1_3, CK2_1, CK2_2,CK2_3, T1_1, T1_2, T1_3, T2_1, T2_1, and T2_1. | CK1 and T1: 35d Green stage (the peel just completely wraps the pulp, 35d after anthesis); CK2 and T2: 57d (The best edible stage of fruit) after anthesis. | 35 days after anthesis treated with 4 mg/L CPPU. | ILLUMINA | PAIRED | Home data | |
| 2 |
‘Feizixiao’ (8-year-old) |
0d (SRR2952606),1d (SRR2954687), 3d (SRR2954690) and 7d (SRR2954691). | 0d (completely green), 1d (only the stipe was colored), 3d (The peel was half colored), and 7d (fully colored).(mix sample of 3 biological replicates). | Fruit clusters were bagged at 42 days after anthesis and removed after 2 weeks. | ILLUMINA | PAIRED | SRA312830 | Zhang et al., 2016 |
| 3 |
‘Nuomici’ (Adult tree) |
Green (SRX700596),Yellow (SRX700598), and Red (SRX700599). | Green,Yellow and Red represented 52, 62 and 72 days after anthesis separately. (mix sample of 3 biological replicates) | Normal condition. | ILLUMINA | SINGLE | SRP047115 | Lai et al., 2015 |
| 4 |
‘Feizixiao’ (10-year-old) |
CK (SRX2336010) and T (SRX2934817). | CK and T reprensted 0 and 28 days after the uniconazole treatment. (mix sample of 2 biological replicates). | Inflorescence length of about 15 cm treated with 50 ppm Uniconazole. | ILLUMINA | SINGLE | SRP092890 | Wei et al., 2015 |
| 5 |
‘Wuye’ ( 9-year-old) |
CK2 (SRX847812), CK4 (SRX847822), CK7 (SRX847823), GPD2 (SRX847824), GPD4 (SRX847825), and GPD7 (SRX847826). | GPD2, GPD4, and GPD7 represented 2, 4 and 7 days after treatment. (Mix sample). | Treated with girdling followed by defoliation (GPD treatment) at 35 days after anthesis | ILLUMINA | SINGLE | SRA234477 | Li et al., 2015 |
| 6 |
‘Feizixiao’ (9-year-old) |
CK0 (SRX5126892),CK1 (SRX5126893), CK2 (SRX5126894), CK3 (SRX5126895), ETH1 (SRX5126896), ETH2 (SRX5126897), and ETH3(SRX5126898). | CK0,CK1,CK2, and CK3 represented 0, 1,2 and 3 days after treatment | Treatment 250 mg/L ethephon solution at 25 days after anthesis. | ILLUMINA | SINGLE | SRP173341 | Li et al., 2015 |
| 7 |
‘Feizixiao’ (Adult tree) |
0d (SRX968371), 4d (SRX968373), 14d-0 h (SRX968375), 14d-24 h (SRX968377), and 14d-48 h (SRX968379). | Samples after harvest on 0d and 4d after stored at room temperature and 0 h, 24 h, and 48 h stored at room temperature after precooling for 14 days. (1 biological replicate). | Samples after harvest. | ILLUMINA | SINGLE | SRA247016 | Yun et al., 2015 |
| Plant materials for qRT-PCR analysis | ||||||||
| 1 |
‘Feizixiao’ (27-year-old) |
35d, 43d, 50d, 57d, 67d, and 71d. | Peel (3 biological replicates). | 35 days after anthesis treated with 4 mg/L CPPU. | Home data | |||
| 2 |
‘Nuomici’ (27-year-old) |
41d, 50d, 60d, 67d, and 77d. | Peel (3 biological replicates). | Normal condition, ( sample follected at 41 days after anthesis). | Home data | |||
| 3 |
‘Feizixiao’ (27-year-old) |
0d, 1d, 2d, and 3d. | Fruitlet (3 biological replicates). | Girdling plus defoliation treatment (GPD) at 35 days after anthesis. | Home data | |||
| 4 |
‘Feizixiao’ (27-year-old) |
0d, 1d, 2d, and 3d. | Abscission zone tissues (3 biological replicates). | 250 mg/L Exogenous ethephon (ETH) at 35 days after anthesis. | Home data | |||