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. 2022 Aug 9;22:394. doi: 10.1186/s12870-022-03772-w

Table 3.

Plant materials used for RNA-Seq and qRT-PCR analysis

Set of RNA-Seq data Variety Sample ID and Samples Treatment Platform LibraryLayout Accesion number Data sources
Plant materials for RNA-Seq analysis
 1

‘Feizixiao’

(27-year-old)

CK1_1, CK1_2,CK1_3, CK2_1, CK2_2,CK2_3, T1_1, T1_2, T1_3, T2_1, T2_1, and T2_1. CK1 and T1: 35d Green stage (the peel just completely wraps the pulp, 35d after anthesis); CK2 and T2: 57d (The best edible stage of fruit) after anthesis. 35 days after anthesis treated with 4 mg/L CPPU. ILLUMINA PAIRED Home data
 2

‘Feizixiao’

(8-year-old)

0d (SRR2952606),1d (SRR2954687), 3d (SRR2954690) and 7d (SRR2954691). 0d (completely green), 1d (only the stipe was colored), 3d (The peel was half colored), and 7d (fully colored).(mix sample of 3 biological replicates). Fruit clusters were bagged at 42 days after anthesis and removed after 2 weeks. ILLUMINA PAIRED SRA312830 Zhang et al., 2016
 3

‘Nuomici’

(Adult tree)

Green (SRX700596),Yellow (SRX700598), and Red (SRX700599). Green,Yellow and Red represented 52, 62 and 72 days after anthesis separately. (mix sample of 3 biological replicates) Normal condition. ILLUMINA SINGLE SRP047115 Lai et al., 2015
 4

‘Feizixiao’

(10-year-old)

CK (SRX2336010) and T (SRX2934817). CK and T reprensted 0 and 28 days after the uniconazole treatment. (mix sample of 2 biological replicates). Inflorescence length of about 15 cm treated with 50 ppm Uniconazole. ILLUMINA SINGLE SRP092890 Wei et al., 2015
 5

‘Wuye’

( 9-year-old)

CK2 (SRX847812), CK4 (SRX847822), CK7 (SRX847823), GPD2 (SRX847824), GPD4 (SRX847825), and GPD7 (SRX847826). GPD2, GPD4, and GPD7 represented 2, 4 and 7 days after treatment. (Mix sample). Treated with girdling followed by defoliation (GPD treatment) at 35 days after anthesis ILLUMINA SINGLE SRA234477 Li et al., 2015
 6

‘Feizixiao’

(9-year-old)

CK0 (SRX5126892),CK1 (SRX5126893), CK2 (SRX5126894), CK3 (SRX5126895), ETH1 (SRX5126896), ETH2 (SRX5126897), and ETH3(SRX5126898). CK0,CK1,CK2, and CK3 represented 0, 1,2 and 3 days after treatment Treatment 250 mg/L ethephon solution at 25 days after anthesis. ILLUMINA SINGLE SRP173341 Li et al., 2015
 7

‘Feizixiao’

(Adult tree)

0d (SRX968371), 4d (SRX968373), 14d-0 h (SRX968375), 14d-24 h (SRX968377), and 14d-48 h (SRX968379). Samples after harvest on 0d and 4d after stored at room temperature and 0 h, 24 h, and 48 h stored at room temperature after precooling for 14 days. (1 biological replicate). Samples after harvest. ILLUMINA SINGLE SRA247016 Yun et al., 2015
Plant materials for qRT-PCR analysis
 1

‘Feizixiao’

(27-year-old)

35d, 43d, 50d, 57d, 67d, and 71d. Peel (3 biological replicates). 35 days after anthesis treated with 4 mg/L CPPU. Home data
 2

‘Nuomici’

(27-year-old)

41d, 50d, 60d, 67d, and 77d. Peel (3 biological replicates). Normal condition, ( sample follected at 41 days after anthesis). Home data
 3

‘Feizixiao’

(27-year-old)

0d, 1d, 2d, and 3d. Fruitlet (3 biological replicates). Girdling plus defoliation treatment (GPD) at 35 days after anthesis. Home data
 4

‘Feizixiao’

(27-year-old)

0d, 1d, 2d, and 3d. Abscission zone tissues (3 biological replicates). 250 mg/L Exogenous ethephon (ETH) at 35 days after anthesis. Home data