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. 2022 Aug 9;17:94. doi: 10.1186/s13020-022-00644-1

Table 1.

Summary of VDL genome assemblies and mapping by NGS reads

Assembly CCS-hifiasm ONT-nextdenovo ONT-necat ONT-wtdbg
Size (Gb) 3.55 4.28 3.75 3.45
N50 (Mb) 2.22 5.64 1.20 0.05
Complete BUSCOs (%) 92.63 90.09 87.92 77.51
NGS mapped rate (%) 99.60 99.60 99.52 99.29
NGS properly paired (%) 96.17 91.44 90.36 85.03
Depth (X) 36.62 30.25 34.36 35.52
Coverage (%) 99.53 75.70 76.31 49.15
Coverage % (≥ 5×) 98.26 69.92 71.12 45.60
Coverage % (≥ 10×) 93.50 61.99 64.11 40.01
Coverage % (≥ 20×) 72.31 42.18 45.90 33.32