Table 4.
Module colors | Diet DEGs | Gene DE by diet and strain | Strain DEGs |
---|---|---|---|
Turquoise | 0 | 9 | 106 |
Yellow | 0 | 19 | 35 |
Red | 0 | 0 | 22 |
Brown | 0 | 1 | 15 |
Green | 0 | 1 | 15 |
Black | 1 | 2 | 13 |
Blue | 1 | 2 | 8 |
Pink | 1 | 6 | 7 |
Purple | 0 | 0 | 6 |
Salmon | 0 | 0 | 5 |
Tan | 0 | 3 | 5 |
Greenyellow | 0 | 1 | 1 |
Magenta | 0 | 0 | 1 |
By intersecting lists of genes across multiple analyses, 434 DEGs in the CC were found to have gene expression levels significantly correlated with body fat % and genes associated with obesity traits in humans in the GWAS catalog, with 3 diet DEGs, 369 strain DEGs, and 62 genes differentially expressed by both diet and strain. The number of genes belonging to each category and assigned to the respective module is shown above, with 148 genes not assigned to any module