REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Mouse monoclonal antibody 24-60 (anti-human IGF-1R) | (Soos et al., 1992) | N/A |
Mouse monoclonal antibody 83-7 (anti-human IR) | (Soos et al., 1986) | N/A |
Mouse monoclonal antibody 18-44 (anti-human IR) | (Soos et al., 1986) | N/A |
Mouse monoclonal antibody 9E10 (anti-c-myc) | CSIRO Laboratories, Parkville, Australia | ATCC CRL1729 |
IRDye 800CW Goat anti-mouse IgG | LI-COR Biosciences | Cat# 926-32210; RRID: AB_621842 |
Chemicals, peptides, and recombinant proteins | ||
9E10 c-myc epitope peptide, sequence EQKLISEEDL (>75% purity) | Genscript | N/A |
18-44 IR epitope peptide, sequence TSPEEHRPFE (>70% purity) | Genscript | N/A |
Receptor grade IGF-I | GroPep | Cat# CM001 |
IGF-I | (King et al., 1992) | N/A |
Eu-IGF-I | (Denley et al., 2004) | N/A |
Insulin | Novo Nordisk | Actrapid |
Fetal calf serum | Scientifix | FBSFR-62147A |
G418 | ThermoFisher Scientific | 10131035 |
Puromycin | ThermoFisher Scientific | A1113802 |
L-Methionine sulfoximine | Merck | GSS-1015-F |
Eu-N1-ITC chelate | Perkin Elmer | 1244-302 |
DELFIA Enhancement Solution | Perkin Elmer | 1244-104 |
Fetal Bovine Serum, dialyzed | ThermoFisher Scientific | 30067344 |
DMEM with Glucose, without L-Glutamine | Lonza | 12-614F |
GS Supplement | Merck | GSS-1016-C |
Trypsin Gold | Promega | Cat# V5280 |
FuGENE HD transfection agent | Promega | E2311 |
ProSep-vA resin | Millipore | |
Deposited data | ||
Crystal structure of apo IGF-1R ectodomain | (Xu et al., 2018) | PDB: 5U8R |
Crystal structure of apo IR ectodomain | (Croll et al., 2016) | PDB: 4ZXB |
CryoEM structure of IGF-II bound IGF-1R (head region; open conformation | (Xu et al., 2020) | PDB: 6VXG |
Model: IGF-I-bound HybZip, head region | This study | PDB: 7S0Q |
Model: IGF-I-bound HybZip, leg region | This study | PDB: 7S8V |
Map: IGF-I-bound HybZip, head region | This study | EMD-24791 |
Map: IGF-I-bound HybZip, leg region | This study | EMD-24927 |
Experimental models: Cell lines | ||
BALB/c3T3 cells overexpressing IGF-IR | (Pietrzkowski et al., 1992) | P6 |
IGF-IR null mouse fibroblasts overexpressing the human IR-B | In-house; (Denley et al., 2004) | R-IR-B |
CHO-Lec8 | ATCC | ATCC CRL-1737 |
Recombinant DNA | ||
IGF-1Rzip | (Xu et al., 2020) | N/A |
IR-Bzip, custom synthesis and cloning | Genscript | N/A |
pEE14 vector | Lonza | N/A |
pJ509 vector | DNA 2.0 | N/A |
oligo 5'-GCGCGTCGACGCCT CCTTCAAGTCCCAG-3' |
Integrated DNA Technologies | N/A |
oligo 5'-GCGCTCTAGATTATT AATTCAGATCCTC-3' |
Integrated DNA Technologies | N/A |
Software and algorithms | ||
RELION v3.0.5 | (Nakane et al., 2018) | https://www3.mrc-lmb.cam.ac.uk/relion |
CryoSPARC v2.11 | (Punjani et al., 2017) | https://cryosparc.com/ |
ISOLDE v1.03b | (Croll, 2018) | https://isolde.cimr.cam.ac.uk/ |
Phenix v1.16-3549-000 | (Afonine et al., 2018) | https://www.phenix-online.org/ |
Coot v0.8.9.1 | (Emsley et al., 2010) | https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/ |
Chimera v1.11.2 | (Pettersen et al., 2004) | https://www.cgl.ucsf.edu/chimera/ |
ChimeraX v0.91 | (Goddard et al., 2018) | https://www.cgl.ucsf.edu/chimerax/ |
Graphpad Prism v9.0.0 | Graphpad Software | https://www.graphpad.com/scientific-software/prism/ |
Other | ||
Mini-Leak low divinylsulphone-activated resin | Kem-en-Tec | Cat# 1011 H |
Sepharose CL-4B resin | GE Healthcare Lifesciences | Cat# 17015001 |
Sephadex-G75 | GE Healthcare / Cytiva | Cat# 17005001 |
Pellicon 3 0.11 m2 10 kDa Ultracel concentrator | Merck-Millipore | Cat# P3C010C01 |
Superdex 200 Increase 10/300 GL | GE Healthcare Lifesciences | Cat# 28990944 |
0.5 mL 10 kDa Amicon Ultra concentrator | Sigma-Aldrich | Cat# UFC501008 |
UltrAuFoil R1.2/1.3 300-mesh grids | Quantifoil | N/A |
Pelco easiGlow | Ted Pella | Cat# 91000S-230 |
Vitrobot mark IV | ThermoFisher Scientific | N/A |