Antibodies |
Anti-HIF2α |
ABclonal |
Cat# A7553; RRID: AB_2768078 |
Anti-ATF4 |
ABclonal |
Cat# A18687; RRID: AB_2862422 |
Anti-Rab27a |
Cell signaling technology |
Cat# 69295; RRID:AB_2799759 |
Anti-Rab27b |
ABclonal |
Cat# A8897; RRID: AB_2771907 |
Anti-HSP90 |
Santa Cruz |
Cat# sc-101494; RRID: AB_1124018 |
Anti-Phospho-AKT Ser473 |
Cell signaling technology |
Cat# 9271S; RRID: AB_329825 |
Anti-pan AKT |
Cell signaling technology |
Cat# 4691S; RRID: AB_915783 |
Anti-FPN |
ABclonal |
Cat# A14884; RRID: AB_2761764 |
Anti-FtH |
ABclonal |
Cat# A1144; RRID: AB_2758562 |
Anti-Cd11b-FITC |
BioLegend |
Cat# 101205; RRID: AB_312788 |
Anti-F4/80-PE Cy7 |
BioLegend |
Cat# 123113; RRID: AB_893490 |
Anti-Cd45-APC Cy7 |
BioLegend |
Cat# 103115; RRID: AB_312980 |
Anti-Desmin, eFluor 660 |
eBioscience |
Cat# 50-9747-80; RRID: AB_2574355 |
Anti-phospho-eIF2a |
Cell signaling technology |
Cat# 3398; RRID: AB_2096481 |
Anti-α-SMA (for immunofluorescent staining assays) |
eBioscience |
Cat# 14-9760-82; RRID: AB_2572996 |
Anti-α-SMA (for Western blots) |
Sigma Aldrich |
Cat# A5228-25UL; RRID: AB_262054 |
Chemicals, Peptides, and Recombinant Proteins
|
Live/Dead Fixable Aqua dead cell stain kit |
ThermoFisher |
Cat# L34966
|
Novolin R regular human insulin used in ITTs |
Novo-Nordisk |
Cat# NDC 0169-1833-11 |
Sodium acetate (1-14C) |
APC0101A-50 μCi |
American Radiolabeled Chemicals, Inc |
Dextrose |
Hospira, Inc |
Cat# 0409-6648-02 |
DT (Diphtheria Toxin) |
Bio Academia |
Cat# 01-517 |
Percoll |
GE Healthcare Life Sciences |
Cat# 17-0891-01 |
SuperSignal™ West Femto Maximum Sensitivity Substrate |
ThermoFisher Scientific |
Cat# 34095 |
Halt Protease and Phosphatase Inhibitor Cocktail |
ThermoFisher Scientific |
Cat# 78440 |
RIPA buffer (10x) |
Cell Signaling Technology |
Cat# 9806 |
AIN76A Western Diet |
TestDiet |
Cat# 5342 |
Collagenase D |
Roche |
Cat# 11088882001 |
Pronase |
Roche |
Cat# 11459643001 |
DNAnase I |
Roche |
Cat# 10104159001 |
RBC lysis buffer |
eBioscience |
Cat# 00-4333-57 |
High-capacity cDNA reverse transcription kit |
ThermoFisher Scientific |
Cat# 4368813 |
iTaq SYBR Green supermix |
Bio-Rad |
Cat# 172-5125 |
Exosome-depleted FBS |
SBI |
Cat# EXO-FBSHI-50A-1 |
Lipofectamine RNAiMAX reagent |
ThermoFisher Scientific |
Cat# 13778-075 |
Empty liposome |
FormuMax |
Cat# F70101-NH |
Iron-Dextran |
Sigma-Aldrich |
Cat# D8517 |
FAC (Ammonium iron citrate) |
Sigma-Aldrich |
Cat# F5879 |
DFO (Deferoxamine mesylate salt) |
Sigma-Aldrich |
Cat# D9533 |
Holo-transferrin |
Sigma-Aldrich |
Cat# T0665 |
Apo-transferrin |
Sigma-Aldrich |
Cat# T5391 |
Palmitic acid |
Sigma-Aldrich |
Cat# P5585 |
Critical Commercial Assays
|
Quick-RNA microprep kit |
Zymo research |
Cat#R1051 |
Triglyceride colorimetric assay kit |
Cayman |
Cat# 10010303 |
Iron Assay Kit |
Sigma Aldrich |
MAK025 |
Mouse Hepcidin ELISA Kit |
BioVision |
E4693-100 |
ROS-ID Total ROS/Superoxide Detection Kit |
Enzo Life Sciences |
ENZ-51010 |
Deposited Data
|
RNA seq data |
GEO database |
GSE185694 |
Experimental Models: Organisms/Strains
|
Mouse: WT C57BL6/J |
Jackson Laboratories |
JAX: 000664 |
Mouse: ATF4 flox/flox
|
Michael Karin lab |
JAX: 006366 |
Mouse: Rosa26-floxed STOP-Cas9
|
Jackson Laboratories |
JAX: 026175 |
Mouse: Albumin cre
|
Jackson Laboratories |
JAX: 003574 |
Mouse: B6-iDTR, ROSA26iDTR
|
Jackson Laboratories |
JAX: 007900 |
Mouse: C57BL/6-Lratem1(2A-Cre)Smoc
|
Shanghai Model Organisms |
NM-KI-190097 |
Mouse: Clec4f-Cre-tdTomato
|
Jackson Laboratories |
JAX: 033296 |
Oligonucleotides
|
siRNA control |
Horizon Discovery |
Cat# D-001810-01-05 |
siRNA-human Hif2a |
Horizon Discovery |
Cat# J-004814-06-0002 |
siRNA-human ATF4 |
Horizon Discovery |
Cat# J-005125-10-0002 |
siRNA-mouse Hif2a |
Horizon Discovery |
Cat# J-040635-09-0002 |
siRNA-mouse Rab27a |
Horizon Discovery |
Cat# J-060970-09-0002 |
siRNA-mouse Rab27b |
Horizon Discovery |
Cat# J-050808-09-0002 |
siRNA-human Rab27a |
Horizon Discovery |
Cat# J-004667-05-0002 |
siRNA-human Rab27b |
Horizon Discovery |
Cat# J-004228-05-0002 |
Cy3-labeled miR-223 mimic |
GE Dharmacon |
Cat# SO-2465930G |
gRNA-Rab27a plasmid |
Sigma Aldrich |
Sanger Clone ID: MM5000028879 |
gRNA-Rab27b plasmid |
Sigma Aldrich |
Sanger Clone ID: MM5000025441 |
gRNA-Tfrc1 plasmid |
Sigma Aldrich |
Sanger Clone ID: MMPD0000041027 |
gRNA-Fpn plasmid |
Sigma Aldrich |
Sanger Clone ID: MMPD0000046431 |
Software and Algorithms
|
Prism |
Graphpad |
https://www.graphpad.com/scientific-software/prism/
|
FlowJo |
FlowJo |
https://www.flowjo.com/
|
ImageJ |
NIH |
https://imagej.nih.gov/ij/
|
Image Lab |
Bio-Rad |
https://www.bio-rad.com/en-us/product/image-lab-software?ID=KRE6P5E8Z
|