TABLE 2.
Genetic studies to identify linkage groups (LGs) and quantitative trait loci (QTLs) for Ascochyta blight resistance using intra‐ and interspecific biparental populations
| Resistant parent | Susceptible parent | LGs and QTLs | Flanking markers | References |
|---|---|---|---|---|
| FLIP84‐92C | PI599072 (Cicer reticulatum) |
LG1: QTL2 LG4: QTL3 LG6 (now LG4): QTL1 |
QTL1: UBC733b ‐ UBC181a QTL2: UBC836b ‐ Dia4 QTL3: UBC681a ‐ UBC858b |
Santra et al. (2000) |
| FLIP84‐92C (2) | PI359075(1) | LG4 |
QTL1: GAA47 QTL2: TA72, GA2 |
Tekeoglu et al. (2002) |
| ICC12004 | Lasseter |
LG1: QTL1 LG2: QTL2, QTL3 LG3 (now LG4): QTL4, QTL5, QTL6 |
QTL1: STMS28‐TS12b QTL2: TA3a‐TS45 QTL3: TS45‐TA3b QTL 4: PTOFENb212‐TA130 QTL5: TA130‐TA146 QTL 6: TA146‐ClRRinn904 |
Flandez‐Galvez et al. (2003) |
| ILC3279 | ILC1272 |
LG2: ar1, ar2a LG4: ar2b |
ar1: GA16 ar2a: GA16 ar2b: TA130, TA72, TS72 |
Udupa and Baum (2003) |
| PI527930 (Cicer echinospermum) | Lasseter | LG4: QTL1, QTL2 |
QTL1: STMS11, GA2, TR20 QTL2: XLRRb280 |
Collard et al. (2003) |
| ILC3279 | CA2156 | LG4: AR2 | SC/OPK13603, | Millan et al. (2003) |
| ICC4958 | PI489777 | LG4: qtl1 | STMS11, GA2, GAA47, TR20 | Rakshit et al. (2003) |
| FLIP84‐92C(2) | PI359075(1) |
LG2A + 6B: Ar19 LG2B: Ar21d LG4A |
Ar19: GA16 Ar21d: TA37‐TA200 LG4A: GA24‐GAA47 |
Cho et al. (2004) |
| ILC3279 | WR315 |
LG4a: QTLAR1 LG4b: QTLAR2 |
QTLAR1: B/b‐UBC881465‐GAA47 QTLAR2: TA146‐SCY17590 |
Iruela et al. (2006) |
| Hadas | ICC5810 |
LG4: QTL4.1, QTL4.2 LG8: QTL8 |
QTL4.1: H3C041, TA2 QTL4.2: H1A12/H1H13, H1G20 QTL8: TA3 and H3C11a |
Lichtenzveig et al. (2006) |
| ILC72 | Cr5‐10 | LG2 | UBC881621 and OPAI09746 | Cobos et al. (2006) |
| CDC Frontier | ICCV96029 |
LG3: QTL1 LG4: QTL2 LG6: QTL3 |
QTL1: TA64 QTL2: TS54 QTL3: TA176 |
Taran et al. (2007) |
| ILC3279 | WR315 | LG2: QTLAR3 | QTLAR3: TR58, TA194, TS82 | Iruela et al. (2007) |
| FLIP84‐92C | PI599072 | LG4: QTL1 | 20(T)l12‐Right | Rajesh and Muehlbauer (2008) |
| ICCV04516 | ICC4991 (Pb7) |
LG3: QTL1 LG4: QTL2, QTL3 |
QTL1: TR58 QTL2: TA146‐ TR20 QTL3: TA2, TAA170 |
Kottapalli et al. (2009) |
| CDC Frontier | ICCV96029 |
LG3: QTL2 LG4: QTL3 LG6: QTL4 |
QTL2: TA64 QTL3: TS54 QTL4: TA176 |
Anbessa et al. (2009) |
| CDC Luna | ICCV96029 |
LG2: QTL1 LG4: QTL3 |
QTL1: TR19 QTL3: TS54 |
|
| CDC Corinne | ICCV96029 |
LG4: QTL3 LG8: QTL5 |
QTL3: TA132 QTL5: TS45 |
|
| Amit | ICCV96029 | LG3: QTL2 | QTL2: TA64 | |
| ICC3996 | ILWC184 (C. reticulatum) |
LG3: QTL3[9] LG4: QTL4[1], QTL4[7] |
QTL3[9]: TA34‐TA142 QTL4[1]: STMS11‐TAA170 QTL4[7]: H1A12‐H3D09 |
Aryamanesh et al. (2010) |
| ICC12004 | Bivanij | LG3, LG4, LG6 |
LG3: TA125‐TA34 LG4: TA2‐TA72 LG6: GA26‐TA80 |
Taleei et al. (2010) |
| ILC3279 | C 214 |
LG4: AB‐Q‐SR‐4‐1, AB‐Q‐SR‐4‐2 LG5: AB‐Q‐APR‐5B LG6: AB‐Q‐APR‐6‐1, AB‐Q‐APR‐6‐2 |
AB‐Q‐SR‐4‐1: STMS11‐TA130 AB‐Q‐SR‐4‐2: H4G11‐CaM2049 AB‐Q‐APR‐5B: CaM0038‐CaM0805 AB‐Q‐APR‐6‐1: H1I16‐TA106 AB‐Q‐APR‐6‐2: TA106‐CaM0244 |
Sabbavarapu et al. (2013) |
| ICC3996 | Lasseter |
LG4.1: ab_QTL1 LG4.2: ab_QTL2 |
ab_QTL1: TA146‐SNP_40000185 ab_QTL2: SNP_40000840‐ SNP_40001505 |
Stephens et al. (2014) |
| S95362 | Howzat | LG4: ab_QTL1 | ab_QTL1: TA146–TA72 | |
| ILC72 |
Cr5‐10 (a selection from ICCW45 = PI599072) |
LG2: QTLAR3 | QTLAR3: GA16‐TA194 | Madrid et al. (2014) |
| CDC Frontier | ICCV96029 |
LG1: qtlAb‐1.1 LG2: qtlAb‐2.1 LG3: qtlAb‐3.1 LG4: qtlAb‐4.1 LG6: qtlAb‐6.1 LG7: qtlAb‐7.1 LG8: qtlAb‐8.1, qtlAb‐8.2, qtlAb‐8.3 |
qtlAb‐1.1: CAV1SC21.1P1495114 qtlAb‐2.1: scaffold905p1129574 qtlAb‐3.1: CAV1SC548.1P43520 qtlAb‐4.1: scaffold405p948196 qtlAb‐6.1: CAV1sc445.1p92883 qtlAb‐7.1: CAV1SC102.1P548827 qtlAb‐8.1: CAV1SC679.1P39451 qtlAb‐8.2: scaffold1567p981540 qtlAb‐8.3: scaffold21p63604 |
Daba et al. (2016) |
| FLIP84‐92C | PI359075 and PI599072 | LG4: qABR4.1, qABR4.2, qABR4.3 | qABR4.1: CaNIP8 | Kumar et al. (2018) |
| CDC Frontier | ICCV96029 |
LG1: qAB1.1, qAB1.2, qAB1.3, qAB1.4 LG4: qAB4.1, qAB4.2, qAB4.3, qAB4.4, qAB4.5 LG6: qAB6.1, qAB6.2 |
KASP marker | Deokar, Sagi, Daba, et al. (2019) |
| Amit | ICCV96029 |
LG2: qAB2.1, Ca2v2.6p18233152_G/A, Ca2v2.6p18250143_T/A, LG4: qAB4.1, qAB4.2, qAB4.3, qAB4.4 LG7: qAB7.1 |
qAB2.1: Ca2v2.6p18233152_G/A, Ca2v2.6p18250143_T/A, Ca2v2.6p18266481_A/C, qAB4.1: Ca4v2.6p26669292_T/G, qAB4.2: Ca4v2.6p28791114_G/C qAB4.5: Ca4v2.6p43806808_A/G |
|
| Amit | ICCV96029 |
LG2: qAB2.1, qAB2.2, qAB2.3 LG3: qAB3.1 LG4: qAB4.1, qAB4.2 LG5: qAB5.1 LG6: qAB6.1 |
qAB2.1: Ca2‐ABA‐RCav1sc520.1p50440 qAB2.2: Cav1sc246.1p121732‐Cav1sc689.1p195825 qAB2.3: Ca2‐GDSL2‐ Ca2‐PEI qAB3.1: SCA3_15444471‐ SCA3_21346384, |
Deokar, Sagi and Tar'an (2019) |
| GPF2 | ILWC292 (C. reticulatum) | LG4: qab‐4.1, qab‐4.2LG7: qab‐7.1 |
qab‐4.1: CNC_021163.1.32280291, CNC_021163.1.37933917 qab‐4.2: CNC_021163.1.23799836 CNC_021163.1.24184658 qab‐7.1: CNC_021166.1.34330294 CNC_021166.1.34330283 |
Kushwah et al. (2021) |
| 04067–81–2‐1‐1 (C. echinospermum) | Sonali | LG4 | Ca_Ce_18445 [Ca_Ce_18577 & Ca_Ce_18594] Ca_Ce_18656 | Sudheesh et al. (2021) |