Table 1.

Parameters in the Prior Model for the Overall Locus Rates (${\mu }_i$) and Rate Variance Parameters (${\nu }_i$) for $L$ Loci.

Model	No. parameters	Parameters
Gamma-Dirichlet (dir)	$2L$	${\mu }_1,{\mu }_2,\dots ,{\mu }_L$
		${\nu }_1,{\nu }_2,\dots ,{\nu }_L$
Conditional i.i.d. (iid)	$2(L+1)$	${\mu }_1,{\mu }_2,\dots ,{\mu }_L,\overline{\mu }$
		${\nu }_1,{\nu }_2,\dots ,{\nu }_L,\overline{\nu }$

Note.—Under the Gamma-Dirichlet model, $\overline{\mu }=(1/L)\sum _{i=1}^L{\mu }_i$ and $\overline{\nu }=(1/L)\sum _{i=1}^L{\nu }_i$ are printed out by bpp, but they are not free parameters in the model.