Table 4. Type of H-Bond, β-Bend, and Thermodynamic Properties of Local Minima for the Neutral Leu-EnK Optimized from the Structures Obtained by the ECEPP Force Field and DFT Methods at the DSD-PBEP86-D3BJ/def2-TZVP//M06-2X/6-31+G(d) Level of Theory in the Gas Phaseah.
| conf.b | H-bond typec | β-bendd | ΔEe | ΔHf | ΔGg |
|---|---|---|---|---|---|
| ECEPP3-1 | OH1 → 4, 4 → 3, OH5 → 1 | 10.64 | 10.61 | 9.46 | |
| ECEPP3-2 | OH1 → 4, 4 → 3, OH5 → 1 | 10.50 | 10.93 | 8.85 | |
| ECEPP3-3 | OH1 → 4, 4 → 3, OH5 → 1 | 11.94 | 11.86 | 11.31 | |
| ECEPP3-4 | OH1 → 4, 2 → 5, 3 → 1, 5 → 2 | βII′34 | 10.32 | 10.72 | 11.25 |
| ECEPP3-5 | OH1 → 3, 4 → 1 | βII′23 | 17.75 | 17.47 | 15.62 |
| ECEPP3-6 | OH1 → 4, 2 → 5, 3 → 1, 4 → 2, 5 → 2 | βII′34 | 4.22 | 4.57 | 4.76 |
| ECEPP3-7 | OH1 → 4, 4 → 2, OH5 → 1 | 8.89 | 8.85 | 6.60 | |
| ECEPP3-8 | 4 → 1 | βII′23 | 20.59 | 19.97 | 17.65 |
| ECEPP3-9 | OH1 → 3, 2 → 5, 4 → 3 | 6.90 | 6.92 | 5.88 | |
| MM1 | OH1 → 3, 2 → 5, 4 → 2, 5 → 2 | βII′34 | 7.24 | 7.44 | 5.11 |
| MM2 | OH1 → 3, 4 → 1 | βII′23 | 17.75 | 17.47 | 15.62 |
| MM3 | 1 → 4, 3 → 1 | 17.69 | 17.45 | 13.78 | |
| MM4 | 1 → 4, 3 → 1 | 17.08 | 16.72 | 14.30 | |
| VG | 2 → OH5, 5 → 2 | βII′34 | 11.50 | 11.32 | 7.42 |
| J1 | 1 → 4, 4 → 1, 5 → 3, OH5 → 4 | βI′23 | 13.99 | 14.18 | 12.16 |
| J2 | 1 → 4, 4 → 1, 5 → 3 | βI′23 | 13.70 | 13.62 | 10.73 |
| J3 | 4 → 1, 5 → 3, OH5 → 4 | βI′23 | 11.59 | 11.22 | 9.39 |
| WH1 | OH1 → 3, 4 → 1 | βI′23 | 12.23 | 12.31 | 10.61 |
| WH2 | OH1 → 4, 4 → 1 | βII′23 | 11.60 | 11.41 | 9.26 |
| WH3 | OH1 → 3 | 18.08 | 17.58 | 13.52 |
Each H-bond type n → m stands for the H-bond between the H donor (e.g., the amide H atom for backbone) of the residue n and the H acceptor (e.g., the carbonyl O atom for backbone) of the residue m. In addition, OH1 and OH5 represent the hydroxyl H atom of the side chain of the Tyr1 residue and the carboxylic H atom of the Leu5 residue, respectively. 5OH represents the O atom of the carboxylic OH group of the Leu5 residue.
βII′23 and βI′23 stand for the type II′ and I′ β-bend at the Gly2–Gly3 sequence, which are stabilized by the 4 → 1 H-bond. βII′34 stands for the type II′ β-bend at the Gly3–Phe4 sequence, which is stabilized by the 5 → 2 H-bond.
Relative electronic energies in kcal mol–1.
Relative enthalpies in kcal mol–1 at 25 °C.
Relative Gibbs free energies in kcal mol–1 at 25 °C and 1 atm.
The population of each conformer was calculated by its ΔG at 25 °C.