Skip to main content
. 2022 Jul 26;7(31):27755–27768. doi: 10.1021/acsomega.2c03942

Table 6. Type of H-bond, β-Bend, Thermodynamic Properties, and Population of 16 Local Minima for the Zwitterionic Leu-EnK Calculated at the DSD-PBEP86-D3BJ/def2-TZVP//SMD M06-2X/6-31+G(d) Level of Theory in Watera.

conf. H-bond typeb β-bendc ΔEwd ΔHwe ΔGwf wg
zw01 1 → 5, 4 → 1, 5 → 2 βII′23, βI34 0.84 0.61 0.00 48.1
zw02 1 → 4, 1 → 5, 4 → 1 βII′23 1.15 1.39 0.69 15.0
zw03 1 → 4, 1 → 5, 4 → 1 βII′23 1.78 1.74 0.69 15.0
zw04 1 → 5, 4 → 1, 5 → 2 βII′23, βI34 3.66 3.50 1.54 3.6
zw05 OH1 → 5, 5 → 2 βI34 0.00 0.00 1.70 2.8
zw06 OH1 → 5, 5 → 2 βI34 1.16 1.46 1.77 2.4
zw07 1 → 5, 2 → 5, 5 → 2 βII′34 3.49 3.38 1.94 1.8
zw08 OH1 → 3, 2 → 5, 4 → 2   1.65 1.69 1.96 1.8
zw09 OH1 → 3, 2 → 5, 4 → 2   1.71 1.67 2.12 1.4
zw10 OH1 → 3, 2 → 5, 4 → 2   3.34 3.26 2.15 1.3
zw11 OH1 → 5, 5 → 2 βI34 1.25 1.44 2.27 1.1
zw12 OH1 → 3, 2 → 5, 4 → 2   1.75 2.02 2.27 1.0
zw13 OH1 → 5, 2 → 4, 3 → 1   1.55 1.52 2.50 0.7
zw14 OH1 → 3, 2 → 5, 4 → 2   3.05 3.20 2.77 0.5
zw15 OH1 → 3, 2 → 5, 4 → 2   3.35 3.70 2.97 0.3
zw16 OH1 → 5, 5 → 2 βI34 2.37 2.15 2.98 0.3
a

Torsion angles (°) are listed in Table 5. Only 16 local minima with the relative Gibbs free energy (ΔGw) < 3 kcal mol–1 are listed.

b

Each H-bond type nm stands for the H-bond between the H donor (e.g., the amide H atom for backbone) of the residue n and the H acceptor (e.g., the carbonyl O atom for backbone) of the residue m. In addition, OH1 represents the hydroxyl H atom of the side chain of the Tyr1 residue.

c

βII′23 stands for the type II′ β-bend at the Gly2–Gly3 sequence, which are stabilized by the 4 → 1 H-bond. βI34 and βII′34 stand for the type I and II′ β-bend at the Gly3–Phe4 sequence, respectively, which are stabilized by the 5 → 2 H-bond.

d

Relative electronic energies in kcal mol–1.

e

Relative enthalpies in kcal mol–1 at 25 °C.

f

Relative Gibbs free energies in kcal mol–1 at 25 °C and 1 atm.

g

The population of each conformer was calculated by its ΔGw at 25 °C.