Table 1.
Genome assembly statistics for echinoderm genomes available at the NCBI’s Assembly database (https://www.ncbi.nlm.nih.gov/assembly) on Jun. 17, 2021. Ditto marks (") indicate values identical to the cell above. Asterisks (*) indicate GenBank assembly accessions that have corresponding RefSeq assemblies
| Organism name | Class: Order | GenBank assembly | Length (Mbp) | Scaffold No. | Scaffold N50 (bp) | Citations |
|---|---|---|---|---|---|---|
| Asterias rubens | Asteroidea: | GCA_902459465.3* | 418 | 150 | 20,558,067 | [81] |
| (European starfish) | Forcipulatida | |||||
| Pisaster ochraceus | " | GCA_010994315.1 | 402 | 1,844 | 20,188,303 | [82] |
| (purple sea star) | ||||||
| Acanthaster planci | Asteroidea: | GCA_001949145.1* | 384 | 1,766 | 1,521,119 | [16, 83, 84] |
| (crown-of-thorns starfish) | Valvatida | |||||
| Patiria miniata | " | GCA_000285935.1 | 811 | 60,183 | 52,614 | NA |
| (bat star) | ||||||
| Patiriella regularis | " | GCA_900067625.1 | 949 | 3,006,458 | 557 | [17] |
| (starfish) | ||||||
| Anneissia japonica | Crinoidea: | GCA_011630105.1* | 590 | 76,727 | 623,489 | NA |
| (crinoids) | Comatulida | |||||
| Hemicentrotus pulcherrimus | Echinoidea: | GCA_003118195.1 | 559 | 16,251 | 142,559 | [12, 85] |
| (sea urchins) | Camarodonta | |||||
| Lytechinus pictus | " | GCA_015342785.1 | 999 | 1,307 | 46,003,000 | [86] |
| (painted urchin) | ||||||
| Lytechinus variegatus | " | GCA_018143015.1 | 870 | 104 | 45,600,000 | [87],[88] |
| (green sea urchin) | ||||||
| Strongylocentrotus purpuratus | " | GCA_000002235.4* | 922 | 871 | 37,282,239 | [10, 79, 89–106] |
| (purple sea urchin) | ||||||
| Eucidaris tribuloides | Echinoidea: | GCA_001188425.1 | 2,187 | 637,071 | 39,192 | NA |
| (sea urchins) | Cidaroida | |||||
| Actinopyga echinites | Holothuroidea: | GCA_010015985.1 | 899 | 895,374 | 1,907 | NA |
| (sea cucumbers) | Holothuriida | |||||
| Holothuria glaberrima | " | GCA_009936505.1 | 1,128 | 346,783 | 1,221,172 | NA |
| (sea cucumbers) | ||||||
| Apostichopus japonicus | Holothuroidea: | GCA_002754855.1 | 805 | 3,278 | 487,241 | [15] |
| (Japanese sea cucumber) | Synallactida | |||||
| Apostichopus leukothele | " | GCA_010014835.1 | 481 | 74,445 | 1,493,354 | NA |
| (sea cucumbers) | ||||||
| Apostichopus parvimensis | " | GCA_000934455.1 | 873 | 21,559 | 89,133 | NA |
| (sea cucumbers) | ||||||
| Australostichopus mollis | " | GCA_900067635.1 | 1,252 | 3,712,641 | 626 | [17] |
| (sea cucumbers) | ||||||
| Paelopatides confundens | " | GCA_011317855.1 | 1,379 | 764,445 | 504,687 | NA |
| (sea cucumbers) | ||||||
| Stichopus horrens | " | GCA_009801055.1 | 689 | 423,833 | 3,896 | NA |
| (warty sea cucumber) | ||||||
| Ophionereis fasciata | Ophiuroidea: | GCA_900067615.1 | 1,185 | 3,968,282 | 484 | [17] |
| (brittle stars) | Amphilepidida | |||||
| Ophiothrix spiculata | " | GCA_000969725.1 | 2,764 | 75,696 | 72,780 | NA |
| (brittle stars) |