Table 1.
List of significantly differentially expressed NLRs in compatible and incompatible interaction, at 48 hpi and 72 hpi.
| Incompatible | Compatible | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C531 vs. Mock 48 hpi |
C531 vs. Mock 72 hpi |
Strain 100 vs. Mock 48 hpi |
Strain 100 vs. Mock 72 hpi |
||||||||||||||
| Gene ID | Annotation | Methylation Status | 24nt siRNA |
LogFC | FDR | LogFC | FDR | LogFC | FDR | LogFC | FDR | ||||||
| Phvul.002G098200 | PTHR23155:SF414 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | UM | None | 1.96 | 4.56E-03 | 1.95 | 9.53E-04 | 1.45 | 7.98E-02 | 1.78 | 3.97E-03 | ||||||
| Phvul.011G201900 | PTHR23155:SF414 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | UM | None | 1.85 | 1.08E-02 | 0.39 | 6.31E-01 | 0.37 | 8.23E-01 | 0.57 | 4.26E-01 | ||||||
| Phvul.002G133400 | PTHR23155:SF633 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | UM | None | 1.62 | 2.71E-03 | 1.46 | 2.05E-03 | 1.58 | 5.42E-03 | 1.33 | 7.01E-03 | ||||||
| Phvul.008G020700 | PTHR23155:SF497 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | UM | None | 1.45 | 1.74E-02 | 2.38 | 1.40E-06 | 1.52 | 1.67E-02 | 1.94 | 1.36E-04 | ||||||
| Phvul.005G117900 | PTHR23155:SF497 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | UM | None | 1.41 | 4.96E-02 | 1.93 | 3.73E-04 | 1.33 | 9.20E-02 | 1.73 | 2.47E-03 | ||||||
| Phvul.011G014400 | PTHR23155:SF402 DISEASE RESISTANCE PROTEIN RPP13-RELATED | UM | None | 1.08 | 5.96E-03 | 1.05 | 2.16E-03 | 0.92 | 3.83E-02 | 1.10 | 2.06E-03 | ||||||
| Phvul.010G024100 | PF00931//PF01582 NB-ARC domain (NB-ARC)//TIR domain (TIR) | UM | None | 0.95 | 8.43E-03 | 0.70 | 2.90E-02 | 0.64 | 1.60E-01 | 0.43 | 2.22E-01 | ||||||
| Phvul.009G233700 | PTHR23155:SF402 DISEASE RESISTANCE PROTEIN RPP13-RELATED | UM | None | 0.84 | 3.76E-02 | 1.27 | 6.95E-05 | 0.82 | 5.69E-02 | 1.35 | 2.94E-05 | ||||||
| Phvul.007G254700 | PTHR23155:SF563 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | UM | None | 1.74 | 6.79E-02 | 1.75 | 1.53E-02 | 1.25 | 2.87E-01 | 2.04 | 6.30E-03 | ||||||
| Phvul.002G171400 | PTHR11945:SF169 MADS-BOX FAMILY PROTEIN | UM | None | 1.54 | 7.79E-02 | 1.78 | 1.06E-02 | 0.74 | 5.56E-01 | 1.78 | 1.36E-02 | ||||||
| Phvul.008G020900 | PTHR23155:SF497 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | UM | None | 2.17 | 6.08E-02 | 1.74 | 3.75E-02 | 1.89 | 1.59E-01 | 1.40 | 1.15E-01 | ||||||
| Phvul.008G020750 | PTHR23155:SF497 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | N.A | N.A | 1.33 | 1.35E-01 | 1.71 | 8.52E-03 | 1.32 | 1.83E-01 | 0.92 | 2.23E-01 | ||||||
| Phvul.003G129700 | PTHR11017:SF169 DISEASE RESISTANCE PROTEIN-RELATED | UM | None | 1.32 | 3.43E-01 | 2.33 | 1.07E-02 | 1.49 | 3.04E-01 | 2.63 | 5.49E-03 | ||||||
| Phvul.010G028200 | PF00931//PF13676 NB-ARC domain (NB-ARC) TIR domain (TIR_2) | UM | None | 1.24 | 1.03E-01 | 1.21 | 3.57E-02 | 0.81 | 4.07E-01 | 1.10 | 7.08E-02 | ||||||
| Phvul.001G132301 | PTHR23155:SF563 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | N.A | N.A | 1.17 | 3.09E-01 | 1.66 | 4.42E-02 | 0.94 | 5.13E-01 | 2.21 | 6.15E-03 | ||||||
| Phvul.011G014500 | PTHR23155:SF402 DISEASE RESISTANCE PROTEIN RPP13-RELATED | UM | None | 0.92 | 1.00E-01 | 1.24 | 3.83E-03 | 0.94 | 1.12E-01 | 1.43 | 1.11E-03 | ||||||
| Phvul.002G133600 | PTHR23155:SF633 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | CG-Meth | None | 0.68 | 3.15E-01 | 1.24 | 6.35E-03 | 0.55 | 4.80E-01 | 1.36 | 4.14E-03 | ||||||
| Phvul.004G048000 | PTHR23155:SF554 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | C-Meth | Yes | 0.60 | 6.64E-01 | 1.94 | 1.71E-02 | 0.41 | 8.17E-01 | 2.54 | 2.22E-03 | ||||||
| Phvul.004G013300 | K00122 Formate dehydrogenase (FDH) | C-Meth | Yes | 0.59 | 2.29E-01 | 0.81 | 1.61E-02 | 0.18 | 8.26E-01 | 0.61 | 9.14E-02 | ||||||
| Phvul.003G247200 | PTHR23155:SF543 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | UM | None | 0.57 | 1.32E-01 | 1.01 | 3.58E-04 | 0.50 | 2.52E-01 | 1.02 | 4.75E-04 | ||||||
| Phvul.011G136130 | K14488 SAUR family protein (SAUR) | N.A | N.A | 0.47 | 3.47E-01 | 0.75 | 2.44E-02 | 0.14 | 8.59E-01 | 0.44 | 2.35E-01 | ||||||
| Phvul.004G140700 | PF05729//PF13676 NACHT domain (NACHT)//TIR domain | UM | None | 0.42 | 3.74E-01 | 0.81 | 8.70E-03 | 0.38 | 4.65E-01 | 0.85 | 7.76E-03 | ||||||
| Phvul.003G072500 | PTHR12565:SF107 TRANSCRIPTION FACTOR BPE | UM | None | 0.35 | 3.25E-01 | 0.50 | 4.40E-02 | 0.20 | 6.79E-01 | 0.61 | 1.35E-02 | ||||||
| Phvul.010G054400 | PF01582 TIR domain (TIR) | UM | None | 0.33 | 8.02E-01 | 2.10 | 1.81E-03 | 0.60 | 6.28E-01 | 1.89 | 7.60E-03 | ||||||
| Phvul.001G134100 | PTHR23155:SF563 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | C-Meth | Yes | 0.32 | 7.09E-01 | 0.94 | 4.28E-02 | 0.26 | 8.04E-01 | 0.74 | 1.37E-01 | ||||||
| Phvul.004G140800 | PTHR11017:SF171 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | C-Meth | None | 0.31 | 6.65E-01 | 1.14 | 4.47E-03 | 0.23 | 7.93E-01 | 1.01 | 1.78E-02 | ||||||
| Phvul.002G131000 | PTHR23155:SF505 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | C-Meth | None | 0.31 | 3.72E-01 | 0.48 | 3.37E-02 | 0.14 | 7.72E-01 | 0.54 | 1.91E-02 | ||||||
| Phvul.011G202900 | PTHR23155:SF414 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | C-Meth | None | 0.30 | 5.76E-01 | 0.79 | 2.01E-02 | 0.24 | 7.14E-01 | 0.27 | 5.26E-01 | ||||||
| Phvul.001G018800 | PTHR23155:SF543 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | UM | None | 0.30 | 3.21E-01 | 0.51 | 1.53E-02 | 0.36 | 2.55E-01 | 0.47 | 3.37E-02 | ||||||
| Phvul.011G172100 | PTHR23155:SF554 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | C-Meth | None | 0.27 | 7.89E-01 | 0.79 | 1.77E-01 | −0.56 | 5.97E-01 | 1.21 | 2.48E-02 | ||||||
| Phvul.002G021700 | PTHR23155:SF543 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | UM | None | 0.25 | 6.57E-01 | 0.79 | 1.48E-02 | 0.24 | 7.03E-01 | 0.78 | 2.15E-02 | ||||||
| Phvul.010G101200 | PTHR11017:SF174 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | C-Meth | None | 0.23 | 7.79E-01 | 1.07 | 1.51E-02 | 0.11 | 9.26E-01 | 1.29 | 4.25E-03 | ||||||
| Phvul.002G166400 | PTHR23155:SF506 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | UM | None | 0.22 | 5.45E-01 | 0.55 | 1.51E-02 | 0.29 | 4.27E-01 | 0.66 | 3.80E-03 | ||||||
| Phvul.003G247651 | PTHR23155:SF543 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | N.A | N.A | 0.21 | 6.91E-01 | 0.78 | 1.01E-02 | 0.36 | 4.79E-01 | 0.98 | 1.48E-03 | ||||||
| Phvul.011G202966 | PTHR23155:SF414 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | N.A | N.A | 0.21 | 5.19E-01 | 0.49 | 1.49E-02 | 0.08 | 8.70E-01 | 0.42 | 4.95E-02 | ||||||
| Phvul.011G014301 | PTHR23155:SF402 DISEASE RESISTANCE PROTEIN RPP13-RELATED | N.A | N.A | 0.16 | 5.14E-01 | 0.36 | 2.02E-02 | 0.16 | 5.40E-01 | 0.34 | 3.65E-02 | ||||||
| Phvul.011G195100 | PTHR23155:SF414 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | C-Meth | None | 0.12 | 9.27E-01 | 1.56 | 1.68E-02 | 0.75 | 3.86E-01 | 1.29 | 6.74E-02 | ||||||
| Phvul.002G323200 | PTHR11017:SF162 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | UM | None | 0.03 | 9.71E-01 | 0.33 | 3.24E-01 | −0.05 | 9.45E-01 | 0.62 | 4.08E-02 | ||||||
| Phvul.011G193600 | PF00931//PF13855 NB-ARC domain (NB-ARC)//Leucine rich repeat | C-Meth | None | 0.00 | 9.96E-01 | −0.44 | 9.41E-02 | −0.13 | 8.05E-01 | −0.53 | 4.40E-02 | ||||||
| Phvul.010G026400 | PF00931//PF13676 NB-ARC domain (NB-ARC)//TIR domain | C-Meth | None | −0.04 | 9.39E-01 | 0.58 | 2.51E-02 | −0.15 | 7.78E-01 | 0.44 | 1.12E-01 | ||||||
| Phvul.011G074800 | 1.3.99.12 2-methylacyl-CoA dehydrogenase/Branched-chain acyl-CoA | UM | None | −0.09 | 9.24E-01 | 0.90 | 2.50E-02 | −0.08 | 9.37E-01 | 0.56 | 2.06E-01 | ||||||
| Phvul.002G075400 | KOG4308 LRR-containing protein | N.A | N.A | −0.13 | 7.13E-01 | −0.31 | 1.48E-01 | −0.17 | 6.38E-01 | −0.52 | 1.26E-02 | ||||||
| Phvul.011G193100 | PTHR23155:SF414 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | C-Meth | −0.20 | 5.50E-01 | −0.39 | 7.92E-02 | −0.27 | 4.25E-01 | −0.44 | 4.87E-02 | |||||||
| Phvul.011G198400 | PF00931//PF13855 NB-ARC domain (NB-ARC)//Leucine rich repeat | C-Meth | −0.28 | 4.49E-01 | −0.19 | 5.43E-01 | −0.62 | 4.66E-02 | −0.18 | 5.54E-01 | |||||||
| Phvul.008G072300 | PTHR23155:SF590 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | UM | None | −0.45 | 4.26E-01 | 0.03 | 9.67E-01 | −1.00 | 3.95E-02 | −0.02 | 9.76E-01 | ||||||
| Phvul.002G075000 | PTHR23155:SF505 LEUCINE-RICH REPEAT-CONTAINING PROTEIN | UM | None | −0.47 | 6.08E-01 | −0.67 | 3.39E-01 | −1.51 | 4.62E-02 | −0.63 | 3.63E-01 | ||||||
| Phvul.011G191600 | PF13191//PF13855 AAA ATPase domain//Leucine rich repeat | C-Meth | None | −0.60 | 3.96E-02 | −0.03 | 9.38E-01 | −0.65 | 3.26E-02 | −0.18 | 5.65E-01 | ||||||
| Phvul.005G005000 | PTHR32472 P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN | UM | None | −1.81 | 3.97E-02 | −1.50 | 1.40E-01 | −2.54 | 4.87E-03 | −3.78 | 2.70E-03 | ||||||
| N.A: Not available; UM: Unmethylated; C-Meth: CHG or CHH gene-body methylated; CG-Meth: CG gene-body methylated: Underlined (purple): Methylation due to a TE inserted in an intron; Underlined (green): Methylation due to an associated repeat located in an intron. | |||||||||||||||||
| FDR | |||||||||||||||||
| 1.00E-10 | 1.00E-08 | 0.05 | 0.00 | ||||||||||||||
| Log2FC | |||||||||||||||||
| −2.50 | −1.50 | −1.00 | −0.5 | 0.00 | 0.5 | 1.00 | 1.50 | 2.50 | |||||||||