Table 2.
List of significantly differentially expressed pathogenesis-related proteins (PRs) in compatible and incompatible interaction, at 48 hpi and 72 hpi.
| Incompatible | Compatible | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| C531 vs. Mock 48 hpi |
C531 vs. Mock 72 hpi |
Strain 100 vs. Mock 48 hpi | Strain 100 vs. Mock 72 hpi | ||||||||
| Gene ID | Annotation | LogFC | FDR | LogFC | FDR | LogFC | FDR | LogFC | FDR | ||
| Phvul.002G209500 * | PF00407—Pathogenesis-related protein Bet v I family (PR10) | 4.53 | 2.34E-19 | 2.80 | 3.29E-08 | 3.06 | 2.94E-08 | 1.91 | 3.09E-04 | ||
| Phvul.003G109603 | PF00407—Pathogenesis-related protein Bet v I family (PR10) | 4.31 | 4.94E-04 | 2.99 | 3.98E-03 | 3.51 | 1.48E-02 | 2.21 | 4.48E-02 | ||
| Phvul.003G109200 | PF00407—Pathogenesis-related protein Bet v I family (PR10) | 4.18 | 8.46E-10 | 2.94 | 1.54E-05 | 2.69 | 5.41E-04 | 2.30 | 1.31E-03 | ||
| Phvul.002G209400 | PF00407—Pathogenesis-related protein Bet v I family (PR10) | 4.15 | 6.68E-10 | 2.84 | 9.35E-06 | 3.02 | 1.03E-04 | 2.14 | 1.57E-03 | ||
| Phvul.003G109800 | PF00407—Pathogenesis-related protein Bet v I family (PR10) | 3.63 | 2.12E-03 | 2.84 | 1.29E-03 | 1.68 | 4.46E-01 | 1.92 | 6.28E-02 | ||
| Phvul.003G109000 | PTHR31339—PECTIN LYASE-LIKE SUPERFAMILY PROTEIN (Bet v 1) (PR10) | 3.46 | 7.35E-05 | 2.52 | 1.14E-03 | 2.81 | 3.85E-03 | 2.85 | 3.11E-04 | ||
| Phvul.003G109100 | PTHR22847:SF361—JOUBERIN Bet v I family (PR10) | 3.44 | 6.18E-09 | 2.62 | 1.13E-05 | 2.66 | 7.18E-05 | 1.83 | 3.14E-03 | ||
| Phvul.002G155500 | PF00314—Thaumatin family (Thaumatin) Pathogenesis-related (PR5) | 2.23 | 9.47E-07 | 1.89 | 2.78E-05 | 1.84 | 2.63E-04 | 1.55 | 1.02E-03 | ||
| Phvul.006G196900 ** | K13449—pathogenesis-related protein 1 (PR1) | 2.21 | 2.31E-05 | 1.28 | 1.19E-02 | 1.88 | 1.00E-03 | 0.99 | 6.97E-02 | ||
| Phvul.002G286600 | KOG4837—Uncharacterized conserved protein Pathogenesis-related (PR5) | 1.97 | 2.35E-01 | 2.15 | 2.43E-02 | 1.71 | 3.75E-01 | 2.28 | 2.30E-02 | ||
| Phvul.006G197500 | PTHR10334—CYSTEINE-RICH SECRETORY PROTEIN (PR1) | 1.37 | 3.91E-02 | 0.41 | 5.58E-01 | 0.90 | 2.96E-01 | 0.63 | 3.13E-01 | ||
| Phvul.011G183900 | PF00407—Pathogenesis-related protein Bet v I family (PR10) | 0.95 | 5.62E-02 | 0.94 | 2.09E-02 | 0.73 | 2.20E-01 | 0.97 | 2.33E-02 | ||
| Phvul.011G183766 | PF00407—Pathogenesis-related protein Bet v I family (PR10) | 0.94 | 1.02E-01 | 0.86 | 6.71E-02 | 0.78 | 2.45E-01 | 1.03 | 2.97E-02 | ||
| Phvul.011G183700 | PF00407—Pathogenesis-related protein Bet v I family (PR10) | 0.88 | 4.05E-02 | 0.86 | 1.79E-02 | 0.70 | 1.66E-01 | 0.83 | 2.80E-02 | ||
| Phvul.011G183832 | PF00407—Pathogenesis-related protein Bet v I family (PR10) | 0.83 | 8.87E-02 | 0.89 | 2.25E-02 | 0.71 | 2.08E-01 | 0.92 | 2.39E-02 | ||
| Phvul.002G286500 | PF00314—Thaumatin family (Thaumatin) (PR5) | 0.79 | 4.56E-01 | 2.01 | 3.32E-03 | 0.51 | 7.00E-01 | 2.15 | 2.57E-03 | ||
| Phvul.011G184200 | PF00407—Pathogenesis-related protein Bet v I family (PR10) | 0.77 | 1.00E-02 | 0.86 | 9.60E-04 | 0.62 | 7.75E-02 | 0.78 | 4.18E-03 | ||
| Phvul.011G183400 | PF00407—Pathogenesis-related protein Bet v I family (PR10) | 0.53 | 2.24E-02 | 0.27 | 2.33E-01 | 0.40 | 1.49E-01 | 0.30 | 1.78E-01 | ||
| Phvul.006G197200 | PTHR10334—CYSTEINE-RICH SECRETORY PROTEIN (PR1) | 0.20 | 9.41E-01 | 2.34 | 4.93E-02 | 0.20 | 9.54E-01 | 2.62 | 3.09E-02 | ||
| Phvul.011G183000 | PF00407—Pathogenesis-related protein Bet v I family (PR10) | 0.15 | 9.29E-01 | 0.76 | 3.94E-01 | −0.39 | 8.07E-01 | 1.82 | 2.40E-02 | ||
| Phvul.008G166500 | [NAD(+)], CYTOPLASMIC Pathogenesis-related (PR5) | −0.72 | 1.21E-01 | −1.06 | 1.65E-02 | −0.52 | 3.45E-01 | −0.27 | 5.96E-01 | ||
| Phvul.009G082100 | Pathogenesis-related protein p14a (PR1-like) | −0.76 | 2.41E-01 | −1.73 | 1.89E-04 | −0.65 | 3.79E-01 | −1.44 | 2.73E-03 | ||
| Phvul.011G182900 | PF00407—Pathogenesis-related protein Bet v I family (PR10) | −0.89 | 2.05E-02 | −1.05 | 3.12E-03 | −0.82 | 5.06E-02 | −0.60 | 1.16E-01 | ||
| Phvul.001G016700 | PTHR31048:SF10—PATHOGENESIS-RELATED PROTEIN 5-RELATED (PR5) | −0.93 | 2.16E-01 | −2.26 | 1.62E-04 | −0.64 | 4.84E-01 | −1.27 | 3.64E-02 | ||
| Phvul.011G034200 | PROTEIN AGD2-RELATED Pathogenesis-related (PR5) | −0.98 | 3.90E-01 | −2.19 | 6.17E-03 | −0.60 | 6.76E-01 | −1.48 | 7.49E-02 | ||
| *; **: Bet v I (PR10) and PR1 are presented in bold and underlined, respectively, while PR5 encoding genes appears in normal character. | |||||||||||
| FDR | |||||||||||
| 1.00E-10 | 1.00E-08 | 0.05 | 0.00 | ||||||||
| Log2FC | |||||||||||
| −2.50 | −1.50 | −1.00 | −0.5 | 0.00 | 0.5 | 1.00 | 1.50 | 2.50 | |||