Table 3.
List of defense-related plant hormones genes differentially expressed in at least one pairwise comparison, in compatible and incompatible interaction, at 48 hpi and 72 hpi.
| Incompatible | Compatible | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| C531 vs. Mock 48 hpi |
C531 vs. Mock 72 hpi |
Strain 100 vs. Mock 48 hpi |
Strain 100 vs. Mock 72 hpi |
||||||||
| Gene ID | Annotation | LogFC | FDR | LogFC | FDR | LogFC | FDR | LogFC | FDR | ||
| Auxins | |||||||||||
| Phvul.009G103800 | K14488—SAUR family protein (SAUR) | 2.45 | 4.37E-02 | 0.26 | 8.47E-01 | 2.01 | 1.59E-01 | 0.16 | 9.15E-01 | ||
| Phvul.006G186600 | PTHR11772//PTHR11772:SF19—ASPARAGINE SYNTHETASE | 1.10 | 9.08E-02 | 1.03 | 5.09E-02 | 0.92 | 2.24E-01 | 1.13 | 3.62E-02 | ||
| Phvul.009G001800 | K14488—SAUR family protein (SAUR) | 1.02 | 1.72E-01 | 2.39 | 3.71E-05 | 1.12 | 1.52E-01 | 2.41 | 4.03E-05 | ||
| Phvul.006G142300 | PTHR23130:SF80-AUXIN-INDUCED IN ROOT CULTURES PROTEIN 12 | 0.85 | 4.61E-02 | 1.38 | 5.42E-05 | 0.91 | 3.76E-02 | 1.44 | 3.37E-05 | ||
| Phvul.009G001500 | K14488—SAUR family protein (SAUR) | 0.65 | 5.15E-01 | 1.31 | 5.46E-02 | −0.08 | 9.65E-01 | 1.59 | 2.06E-02 | ||
| Phvul.011G108500 | PTHR10641//PTHR10641—MYB-LIKE DNA-BINDING PROTEIN MYB | 0.51 | 6.36E-01 | 1.28 | 4.44E-02 | 0.50 | 6.76E-01 | 1.12 | 9.11E-02 | ||
| Phvul.010G117500 | K14488—SAUR family protein (SAUR) | 0.41 | 5.20E-01 | 1.10 | 3.96E-03 | 0.19 | 8.32E-01 | 0.99 | 1.52E-02 | ||
| Phvul.001G147300 | K14487—auxin responsive GH3 gene family (GH3) | 0.34 | 8.10E-01 | 1.57 | 3.47E-02 | −0.34 | 8.43E-01 | 0.79 | 3.60E-01 | ||
| Phvul.007G219500 | PTHR12899//PTHR12899:SF4—39S RIBOSOMAL PROTEIN L18 | 0.34 | 6.94E-01 | 0.99 | 4.84E-02 | 0.47 | 5.83E-01 | 1.41 | 4.67E-03 | ||
| Phvul.011G037300 | PTHR23334—CCAAT/ENHANCER BINDING PROTEIN | 0.11 | 9.10E-01 | −1.39 | 1.16E-02 | −0.19 | 8.46E-01 | −0.40 | 4.98E-01 | ||
| Phvul.002G209300 | PTHR23335:SF12—CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 | 0.05 | 8.70E-01 | 0.26 | 9.24E-02 | 0.01 | 9.80E-01 | 0.44 | 2.91E-03 | ||
| Phvul.011G037900 | PTHR24015:SF364—ATPASE EXPRESSION PROTEIN 3 | −0.22 | 8.14E-01 | −1.18 | 1.58E-02 | −0.10 | 9.41E-01 | −0.93 | 7.20E-02 | ||
| Phvul.002G147300 | PTHR31933:SF3—O-FUCOSYLTRANSFERASE FAMILY PROTEIN | −0.26 | 3.65E-01 | −0.44 | 2.80E-02 | −0.29 | 3.46E-01 | −0.39 | 6.39E-02 | ||
| Phvul.008G286600 | PF03188//PF04526—Eukaryotic cytochrome b561 (Cytochrom B561) | −0.30 | 6.39E-01 | −0.94 | 5.06E-02 | −0.23 | 7.54E-01 | −1.05 | 3.26E-02 | ||
| Phvul.010G125400 | PF02519—Auxin responsive protein (Auxin inducible) | −0.36 | 6.75E-01 | −0.93 | 7.57E-02 | −0.18 | 8.70E-01 | −1.17 | 2.67E-02 | ||
| Phvul.003G190900 | PF03634—TCP family transcription factor (TCP) | −0.37 | 2.34E-01 | −0.61 | 7.03E-03 | −0.31 | 3.93E-01 | −0.42 | 8.54E-02 | ||
| Phvul.003G127801 | PTHR31374:SF22—AUXIN-RESPONSIVE PROTEIN-LIKE PROTEIN | −0.50 | 4.07E-01 | −1.12 | 7.57E-03 | −0.26 | 7.45E-01 | −0.95 | 3.01E-02 | ||
| Phvul.009G188100 | PF03634—TCP family transcription factor (TCP) | −0.50 | 2.34E-01 | −0.65 | 4.12E-02 | −0.37 | 4.60E-01 | −0.54 | 1.06E-01 | ||
| Phvul.006G113100 | PF13639//PF13947//PF14380—Ring finger domain (zf-RING 2) | −1.02 | 1.63E-02 | −0.84 | 6.39E-02 | −0.62 | 2.45E-01 | −0.02 | 9.76E-01 | ||
| Brassinosteroids | |||||||||||
| Phvul.003G187200 | PF00069//PF00560//PF08263—Protein kinase domain (Pkinase) | 2.12 | 7.49E-03 | 1.99 | 2.30E-03 | 2.14 | 9.73E-03 | 2.09 | 2.40E-03 | ||
| Phvul.002G207000 | K13416—brassinosteroid insensitive 1-associated receptor kinase 1 | 1.39 | 1.98E-02 | 1.80 | 2.92E-04 | 1.47 | 1.75E-02 | 1.87 | 2.77E-04 | ||
| Phvul.002G158800 | PTHR14155—RING FINGER DOMAIN-CONTAINING | 0.51 | 1.13E-01 | 0.12 | 7.38E-01 | 0.70 | 2.17E-02 | 0.30 | 2.96E-01 | ||
| Phvul.009G184500 | PF00069//PF00560//PF08263—Protein kinase domain (Pkinase) | 0.43 | 6.22E-01 | 1.05 | 4.16E-02 | 0.70 | 3.92E-01 | 1.17 | 2.65E-02 | ||
| Phvul.006G208100 | K13416—brassinosteroid insensitive 1-associated receptor kinase 1 | 0.28 | 5.13E-01 | 0.56 | 4.35E-02 | 0.23 | 6.55E-01 | 0.60 | 3.50E-02 | ||
| Phvul.002G216900 | Squalene monooxygenase/Squalene epoxidase | 0.04 | 9.81E-01 | −1.82 | 8.58E-03 | −0.44 | 7.44E-01 | −1.24 | 8.65E-02 | ||
| Phvul.004G067300 | no data | 0.00 | 9.97E-01 | −0.79 | 1.24E-02 | −0.16 | 8.18E-01 | −0.88 | 6.79E-03 | ||
| Phvul.009G056400 | K14503—brassinosteroid resistant 1/2 (BZR1 2) | −0.21 | 6.34E-01 | −0.52 | 5.11E-02 | −0.05 | 9.43E-01 | −0.59 | 3.16E-02 | ||
| Phvul.007G223700 | PTHR10015:SF164—HEAT STRESS TRANSCRIPTION FACTOR A-3 | −0.37 | 2.47E-01 | −0.54 | 2.36E-02 | −0.26 | 5.06E-01 | −0.47 | 6.13E-02 | ||
| Phvul.011G031700 | PTHR31388:SF37—PEROXIDASE 4-RELATED | −0.50 | 3.99E-01 | −1.06 | 7.79E-03 | −0.45 | 4.93E-01 | −1.05 | 1.09E-02 | ||
| Phvul.009G020000 | Cycloartenol 24-C-methyltransferase/Sterol C-methyltransferase | −0.52 | 2.28E-01 | −0.66 | 4.08E-02 | −0.09 | 9.05E-01 | −0.45 | 1.97E-01 | ||
| Phvul.002G291800 | PF00651—BTB/POZ domain (BTB) | −0.83 | 2.68E-01 | −2.01 | 1.17E-03 | −0.32 | 7.56E-01 | −0.82 | 1.84E-01 | ||
| Phvul.010G064300 | K02728—20S proteasome subunit alpha 3 (PSMA4) | −1.57 | 4.87E-02 | −2.23 | 2.24E-03 | −1.70 | 3.67E-02 | −2.21 | 2.72E-03 | ||
| Abscisic acid | |||||||||||
| Phvul.011G096800 | KOG0725—Reductases with broad range of substrate specificities | 5.47 | 1.30E-02 | 3.10 | 2.02E-02 | 2.86 | 3.51E-01 | 2.10 | 1.43E-01 | ||
| Phvul.009G218800 | PTHR11926:SF242—UDP-GLYCOSYLTRANSFERASE 71B2-RELATED | 1.54 | 5.86E-03 | 1.45 | 2.20E-03 | 1.35 | 3.08E-02 | 1.14 | 2.62E-02 | ||
| Phvul.004G138600 | PF02893—GRAM domain (GRAM) | 1.02 | 4.17E-01 | 1.83 | 3.34E-02 | 1.33 | 2.91E-01 | 2.11 | 1.89E-02 | ||
| Phvul.008G209900 | K00423—L-ascorbate oxidase (E1.10.3.3) | 0.91 | 9.81E-02 | 1.05 | 1.53E-02 | 0.81 | 1.94E-01 | 1.06 | 1.90E-02 | ||
| Phvul.001G153200 | PF04570—zinc-finger of the FCS-type, C2-C2 (zf-FLZ) | 0.56 | 4.41E-01 | 1.28 | 6.08E-03 | 0.30 | 7.60E-01 | 0.83 | 1.02E-01 | ||
| Phvul.001G087100 | Pleckstrin-homology domain (PH domain) | 0.54 | 7.67E-02 | 0.54 | 3.23E-02 | 0.37 | 3.44E-01 | 0.75 | 2.35E-03 | ||
| Phvul.011G097200 | KOG0725—Reductases with broad range of substrate specificities | 0.48 | 1.39E-01 | 0.73 | 2.86E-03 | 0.62 | 4.72E-02 | 0.53 | 4.50E-02 | ||
| Phvul.002G122200 | PTHR24286:SF10—ABSCISIC ACID 8’-HYDROXYLASE 1-RELATED | 0.15 | 8.58E-01 | 1.06 | 6.51E-03 | 0.33 | 6.45E-01 | 1.13 | 5.44E-03 | ||
| Phvul.003G191100 | PTHR12300:SF52—HVA22-LIKE PROTEIN A-RELATED | −0.30 | 4.45E-01 | −0.74 | 5.03E-03 | −0.42 | 2.80E-01 | −0.55 | 5.38E-02 | ||
| Phvul.002G086700 | PTHR12300:SF51—HVA22-LIKE PROTEIN C | −0.39 | 5.77E-01 | −1.03 | 1.99E-02 | −0.16 | 8.70E-01 | −0.84 | 7.18E-02 | ||
| Phvul.001G007300 | PTHR12300:SF26—HVA22-LIKE PROTEIN G-RELATED | −0.48 | 1.91E-01 | −1.07 | 9.85E-05 | −0.51 | 1.90E-01 | −0.75 | 9.87E-03 | ||
| Phvul.008G190500 | PTHR12300:SF27—HVA22-LIKE PROTEIN F | −0.54 | 3.84E-01 | −1.32 | 3.11E-03 | −0.58 | 3.77E-01 | −1.28 | 5.12E-03 | ||
| Ethylene | |||||||||||
| Phvul.007G273000 | PTHR31190:SF15—ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B | 3.66 | 1.42E-02 | 2.21 | 1.88E-02 | 3.00 | 1.19E-01 | 2.77 | 3.24E-03 | ||
| Phvul.001G160100 | PTHR31190:SF26—ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 2.62 | 1.16E-03 | 1.51 | 2.97E-02 | 1.94 | 5.00E-02 | 0.23 | 8.06E-01 | ||
| Phvul.002G326600 | PTHR18934:SF112—DEA(D/H)-BOX RNA HELICASE FAMILY PROTEIN | 2.29 | 5.13E-04 | 2.25 | 2.29E-04 | 2.31 | 8.01E-04 | 2.44 | 8.86E-05 | ||
| Phvul.010G003300 | no data | 1.95 | 1.13E-02 | 2.72 | 3.41E-05 | 2.02 | 9.54E-03 | 3.37 | 2.34E-07 | ||
| Phvul.007G127800 | PTHR31153:SF3—HISTONE H1FLK-LIKE PROTEIN-RELATED | 1.94 | 9.04E-05 | 1.34 | 4.47E-03 | 1.65 | 2.51E-03 | 1.06 | 3.46E-02 | ||
| Phvul.004G081900 | PTHR13690:SF86—TRANSCRIPTION FACTOR VIP1 | 1.90 | 3.97E-04 | 1.82 | 1.62E-04 | 1.40 | 3.11E-02 | 1.43 | 5.37E-03 | ||
| Phvul.004G081900 | PTHR13690:SF86—TRANSCRIPTION FACTOR VIP1 | 1.90 | 3.97E-04 | 1.82 | 1.62E-04 | 1.40 | 3.11E-02 | 1.43 | 5.37E-03 | ||
| Phvul.003G020100 | PTHR10209- OXIDOREDUCTASE, 2OG-FE II OXYGENASE | 1.67 | 8.68E-03 | 1.42 | 9.56E-03 | 1.10 | 1.76E-01 | 1.29 | 2.38E-02 | ||
| Phvul.003G020000 | 2,4-dihydroxy-1,4-benzoxazin-3-one-glucoside dioxygenase/ | 1.13 | 1.11E-01 | 1.65 | 2.01E-03 | 0.82 | 3.46E-01 | 1.52 | 6.29E-03 | ||
| Phvul.009G066980 | PTHR31729:SF0—ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1.06 | 7.49E-03 | 0.79 | 2.74E-02 | 1.13 | 4.87E-03 | 0.81 | 2.84E-02 | ||
| Phvul.003G020200 | PTHR10209—OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN | 1.05 | 1.92E-01 | 1.18 | 5.48E-02 | 0.97 | 2.76E-01 | 1.47 | 1.85E-02 | ||
| Phvul.008G127500 | PTHR15898:SF1—GLUCOSE-INDUCED DEGRADATION PROTEIN 4 | 1.01 | 7.54E-02 | 1.27 | 4.09E-03 | 0.82 | 2.26E-01 | 0.88 | 6.61E-02 | ||
| Phvul.009G003400 | PTHR10209:SF107 FE(II)-DEPENDENT OXYGENASE-LIKE PROTEIN-RELATED | 0.93 | 2.96E-01 | 1.50 | 1.11E-02 | 1.02 | 2.85E-01 | 1.34 | 3.11E-02 | ||
| Phvul.006G183100 | PF00847—AP2 domain (AP2) | 0.86 | 1.59E-02 | 1.05 | 5.42E-04 | 0.75 | 6.43E-02 | 0.57 | 9.01E-02 | ||
| Phvul.003G020300 | PTHR10209//PTHR10209:SF148—OXIDOREDUCTASE, 2OG-FE II | 0.81 | 1.34E-01 | 0.94 | 2.76E-02 | 0.75 | 2.20E-01 | 0.94 | 3.16E-02 | ||
| Phvul.011G125200 | no data | 0.73 | 3.90E-02 | 0.65 | 2.54E-02 | 0.70 | 6.39E-02 | 0.63 | 3.61E-02 | ||
| Phvul.001G225300 | PF00582—Universal stress protein family (Usp) | 0.69 | 1.23E-01 | 0.75 | 2.57E-02 | 0.41 | 4.92E-01 | 0.55 | 1.32E-01 | ||
| Phvul.007G241600 | K06228—fused (FU) | 0.63 | 1.18E-01 | 0.86 | 5.28E-03 | 0.80 | 4.05E-02 | 0.79 | 1.58E-02 | ||
| Phvul.002G055800 | K09286—EREBP-like factor (EREBP) | 0.54 | 7.35E-02 | 0.84 | 2.93E-04 | 0.79 | 3.33E-03 | 0.85 | 3.09E-04 | ||
| Phvul.002G293000 | K11135—Pin2-interacting protein X1 (PINX1) | 0.52 | 5.51E-01 | 1.22 | 2.66E-02 | 0.59 | 5.20E-01 | 1.33 | 2.07E-02 | ||
| Phvul.004G120700 | Deacetoxyvindoline 4-hydroxylase/Desacetyoxyvindoline-17-hydroxylase | 0.42 | 3.34E-01 | 0.65 | 2.94E-02 | 0.20 | 7.33E-01 | 0.50 | 1.15E-01 | ||
| Phvul.002G055700 | PTHR31190:SF30—ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 | 0.41 | 2.09E-01 | 0.69 | 3.15E-03 | 0.70 | 1.35E-02 | 0.68 | 5.09E-03 | ||
| Phvul.003G223624 | K09286—EREBP-like factor (EREBP) | 0.33 | 3.16E-01 | 0.73 | 9.51E-04 | 0.59 | 3.47E-02 | 0.88 | 5.54E-05 | ||
| Phvul.003G223686 | PTHR31190:SF30—ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 | 0.32 | 4.19E-01 | 0.81 | 1.53E-03 | 0.57 | 9.77E-02 | 0.69 | 1.12E-02 | ||
| Phvul.003G150900 | K19044—E3 ubiquitin-protein ligase XBAT32/33 (XBAT32 33) | 0.09 | 7.77E-01 | 0.36 | 4.76E-02 | 0.08 | 8.30E-01 | 0.36 | 5.50E-02 | ||
| Phvul.002G209300 | PTHR23335:SF12—CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 | 0.05 | 8.70E-01 | 0.26 | 9.24E-02 | 0.01 | 9.80E-01 | 0.44 | 2.91E-03 | ||
| Phvul.006G179800 | PF00847—AP2 domain (AP2) | −0.07 | 9.15E-01 | 0.64 | 3.41E-02 | 0.21 | 7.26E-01 | 0.84 | 5.53E-03 | ||
| Phvul.004G121000 | Deacetoxyvindoline 4-hydroxylase | −0.30 | 5.72E-01 | −0.77 | 2.09E-02 | −0.24 | 7.02E-01 | −0.40 | 2.64E-01 | ||
| Phvul.003G241700 | PTHR31729:SF0- ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | −0.34 | 4.94E-01 | −0.65 | 4.84E-02 | −0.20 | 7.54E-01 | −0.63 | 6.26E-02 | ||
| Salicylic acid | |||||||||||
| Phvul.008G057600 | Caffeine synthase/Dimethylxanthine methyltransferase | 5.07 | 2.40E-05 | 2.95 | 1.04E-03 | 4.41 | 1.11E-03 | 1.77 | 7.16E-02 | ||
| Phvul.001G177700 | K10775—Phenylalanine ammonia-lyase (PAL) | 1.61 | 6.78E-03 | 2.19 | 2.35E-05 | 1.55 | 1.37E-02 | 2.45 | 3.25E-06 | ||
| Phvul.001G177800 | K10775—Phenylalanine ammonia-lyase (PAL) | 1.59 | 2.83E-02 | 2.27 | 1.72E-04 | −0.13 | 1.00E+00 | 2.28 | 2.39E-04 | ||
| Phvul.010G011700 | 5.4.4.2—Isochorismate synthase/Isochorismate synthetase | −0.02 | 9.77E-01 | −0.60 | 6.19E-02 | −0.08 | 1.00E+00 | −0.61 | 6.64E-02 | ||
| Jasmonic acid | |||||||||||
| Phvul.010G134700 | K15718—linoleate 9S-lipoxygenase (LOX1 5) | 1.70 | 1.99E-02 | 2.25 | 2.48E-04 | 1.52 | 6.13E-02 | 1.84 | 3.96E-03 | ||
| Phvul.006G016900 | no data | 1.43 | 1.85E-04 | 1.44 | 5.50E-05 | 1.18 | 5.46E-03 | 1.23 | 1.02E-03 | ||
| Phvul.001G000800 | PTHR22893//PTHR22893:SF62- NADH OXIDOREDUCTASE-RELATED | 0.98 | 1.58E-01 | 1.03 | 4.90E-02 | 0.98 | 1.91E-01 | 1.01 | 6.17E-02 | ||
| Phvul.005G156800 | K15718—linoleate 9S-lipoxygenase (LOX1 5) | 0.88 | 6.18E-01 | −2.52 | 2.72E-02 | 0.19 | 9.46E-01 | −1.01 | 4.37E-01 | ||
| Phvul.009G262900 | PTHR11771:SF38—LIPOXYGENASE 3, CHLOROPLASTIC-RELATED | 0.86 | 1.27E-01 | 1.20 | 4.91E-03 | 0.70 | 2.92E-01 | 1.04 | 2.11E-02 | ||
| Phvul.003G021000 | PTHR33077:SF7—PROTEIN TIFY 6A-RELATED | 0.70 | 6.11E-02 | 0.34 | 3.54E-01 | 0.56 | 2.06E-01 | 0.81 | 1.25E-02 | ||
| Phvul.003G111500 | Delta(4)-3-oxosteroid 5-beta-reductase | 0.55 | 9.25E-02 | 0.64 | 1.21E-02 | 0.54 | 1.28E-01 | 0.42 | 1.30E-01 | ||
| Phvul.005G156900 | K15718—linoleate 9S-lipoxygenase (LOX1 5) | 0.31 | 8.49E-01 | −1.89 | 2.13E-02 | −0.15 | 9.44E-01 | −0.86 | 3.63E-01 | ||
| Phvul.003G129200 | PTHR33077:SF13—PROTEIN TIFY 10A-RELATED | 0.19 | 8.87E-01 | 0.29 | 7.73E-01 | 0.39 | 7.54E-01 | 1.72 | 9.46E-03 | ||
| Phvul.009G225300 | PTHR33077:SF13—PROTEIN TIFY 10A-RELATED | 0.18 | 6.26E-01 | 0.62 | 5.05E-03 | 0.24 | 5.20E-01 | 0.78 | 4.37E-04 | ||
| Phvul.003G131600 | PTHR22893:SF67—12-OXOPHYTODIENOATE REDUCTASE 3 | −0.39 | 2.89E-01 | −0.58 | 2.82E-02 | −0.19 | 7.10E-01 | −0.25 | 4.15E-01 | ||
| Phvul.002G175500 | PTHR11771:SF60—LIPOXYGENASE 6, CHLOROPLASTIC | −0.47 | 3.22E-01 | −0.71 | 4.38E-02 | −0.39 | 4.76E-01 | −0.33 | 4.10E-01 | ||
| Phvul.004G072000 | PTHR31942:SF29—MLO-LIKE PROTEIN 12-RELATED | −0.60 | 9.00E-02 | −0.62 | 3.84E-02 | −0.36 | 4.23E-01 | −0.59 | 5.63E-02 | ||
| Phvul.010G032300 | PTHR11771//PTHR11771:SF59—LIPOXYGENASE | −1.26 | 4.20E-03 | −0.48 | 3.32E-01 | −0.34 | 6.23E-01 | −0.14 | 8.13E-01 | ||
| FDR | |||||||||||
| 1.00E-10 | 1.00E-08 | 0.05 | 0.00 | ||||||||
| Log2FC | |||||||||||
| −2.50 | −1.50 | −1.00 | −0.5 | 0.00 | 0.5 | 1.00 | 1.50 | 2.50 | |||