Skip to main content
. 2022 Aug 1;18(8):e1010737. doi: 10.1371/journal.ppat.1010737

Table 2. A list of the 25 most positively regulated genes in Ea1189Δ12 relative to WT Ea1189.

Locus Tag Gene ID Product Differential Expression Log2 Ratio Differential Expression p-value
EAM_RS14005 TIGR03756 family integrating conjugative elementprotein CDS TIGR03756 family integrating conjugative elementprotein 5.653778414 1.02E-54
EAM_RS14820 AlpA family phage regulatory protein CDS AlpA family phage regulatory protein 5.570644235 1.36E-25
EAM_RS16075 glgB CDS 1,4-alpha-glucan branching enzyme 5.483356916 7.21E-186
EAM_RS01250 fimbrial protein A precursor CDS fimbrial protein A precursor 5.467190074 2.17E-49
EAM_RS16430 hypothetical protein CDS hypothetical protein 5.404620393 5.29E-42
EAM_RS19320 glgX CDS glycogen debranching protein GlgX 5.201160707 5.60E-154
EAM_RS03470 hypothetical protein CDS hypothetical protein 5.029951978 1.09E-42
EAM_RS14000 integrating conjugative element protein CDS integrating conjugative element protein 4.820222392 1.09E-89
EAM_RS06020 YIP1 family protein CDS YIP1 family protein 4.539960781 4.03E-127
EAM_RS09185 galB CDS 4-oxalmesaconate hydratase 4.49334628 2.78E-58
EAM_RS04295 amino acid ABC transporter permease CDS amino acid ABC transporter permease 4.448825708 2.15E-66
EAM_RS14195 sctD CDS type III secretion system inner membrane ring subunit SctD 4.42440179 4.41E-64
EAM_RS04290 transporter substrate-binding domain-containing protein CDS transporter substrate-binding domain-containing protein 4.339006646 5.35E-73
EAM_RS13995 DNA-binding domain-containing protein CDS DNA-binding domain-containing protein 4.322676558 9.56E-106
EAM_RS02010 tssJ CDS type VI secretion system lipoprotein TssJ 4.310343973 6.61E-13
EAM_RS19315 glgC CDS glucose-1-phosphate adenylyltransferase 4.272326359 2.41E-154
EAM_RS03515 prepilin-type N-terminal cleavage/methylation domain-containing protein CDS prepilin-type N-terminal cleavage/methylation domain-containing protein 4.248823084 1.03E-41
EAM_RS12610 chemotaxis response regulator protein-glutamate methylesterase CDS chemotaxis response regulator protein-glutamate methylesterase 4.187095164 9.64E-78
EAM_RS14190 sctV CDS type III secretion system export apparatus subunit SctV 4.186154654 1.22E-108
EAM_RS14010 TIGR03757 family integrating conjugative elementprotein CDS TIGR03757 family integrating conjugative elementprotein 4.13782143 7.78E-46
EAM_RS01905 tssK CDS type VI secretion system baseplate subunit TssK 4.109363563 6.27E-87
EAM_RS09200 NAD(P)-dependent oxidoreductase CDS NAD(P)-dependent oxidoreductase 4.102789474 4.89E-67
EAM_RS14800 type IV toxin-antitoxin system YeeU family antitoxin CDS type IV toxin-antitoxin system YeeU family antitoxin 4.10085975 2.44E-37
EAM_RS01910 type VI secretion system protein TssL, short form CDS type VI secretion system protein TssL, short form 4.092459487 1.93E-53
EAM_RS14795 TA system toxin CbtA family protein CDS TA system toxin CbtA family protein 4.085573729 2.78E-31