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. 2022 Aug 1;18(8):e1010737. doi: 10.1371/journal.ppat.1010737

Table 4. A list of the 15 most positively and negatively regulated genes in Ea1189Δ8+edcB OE relative to Ea1189Δ8.

Locus Tag Gene ID Product Differential Expression Log2 Ratio Differential Expression p-value
EAM_RS02755 GGDEF domain-containing protein CDS GGDEF domain-containing protein 10.52231065 6.1851E-189
EAM_RS15020 DEAD/DEAH family ATP-dependent RNA helicase CDS DEAD/DEAH family ATP-dependent RNA helicase 3.837091548 1.16277E-13
EAM_RS16040 glpD CDS glycerol-3-phosphate dehydrogenase 3.769007801 2.3349E-166
EAM_RS19305 yrbN CDS protein YrbN 3.647272094 5.19945E-39
EAM_RS12870 HlyC/CorC family transporter CDS HlyC/CorC family transporter 3.200198525 5.21317E-57
EAM_RS02090 pantoate—beta-alanine ligase CDS pantoate—beta-alanine ligase 3.161465532 2.6906E-14
EAM_RS12890 yqaB CDS fructose-1-phosphate/6-phosphogluconate phosphatase 2.939408173 6.28088E-17
EAM_RS19660 hypothetical protein CDS hypothetical protein 2.875871177 2.25958E-29
EAM_RS15625 rplF CDS 50S ribosomal protein L6 2.766997946 2.05003E-08
EAM_RS12865 inner membrane protein YpjD CDS inner membrane protein YpjD 2.740181732 1.89396E-14
EAM_RS18730 yidD CDS membrane protein insertion efficiency factor YidD 2.706686489 2.12804E-30
EAM_RS19655 hypothetical protein CDS hypothetical protein 2.678070834 1.05966E-15
EAM_RS15575 rplQ CDS 50S ribosomal protein L17 2.663892023 7.43101E-06
EAM_RS19535 hypothetical protein CDS hypothetical protein 2.648755631 9.56953E-08
EAM_RS12880 glutamate—cysteine ligase CDS glutamate—cysteine ligase 2.61623674 9.55405E-11
EAM_RS10630 hypothetical protein CDS hypothetical protein -3.779142872 8.15852E-22
EAM_RS14150 Hrp pili protein HrpA CDS Hrp pili protein HrpA -3.465753769 1.42198E-09
EAM_RS09925 phoH CDS phosphate starvation-inducible protein PhoH -3.304435872 3.67098E-10
EAM_RS04570 hypothetical protein CDS hypothetical protein -3.22780552 9.51376E-11
EAM_RS01050 dienelactone hydrolase family protein CDS dienelactone hydrolase family protein -3.105210459 3.22279E-25
EAM_RS05285 leucine-rich repeat domain-containing protein CDS leucine-rich repeat domain-containing protein -3.014341576 2.76182E-19
EAM_RS06155 hutG CDS N-formylglutamate deformylase -3.010799292 3.27597E-16
EAM_RS18215 rmf CDS ribosome modulation factor -2.962193193 1.30948E-08
EAM_RS18330 hypothetical protein CDS hypothetical protein -2.89078444 5.49473E-28
EAM_RS01820 hchA CDS protein deglycase HchA -2.858429374 8.44902E-16
EAM_RS02925 hypothetical protein CDS hypothetical protein -2.796397476 2.19042E-05
EAM_RS07845 hypothetical protein CDS hypothetical protein -2.788775685 2.46288E-13
EAM_RS09335 yeaG CDS protein kinase YeaG -2.784222226 6.44011E-12
EAM_RS17045 glycoside hydrolase family 68 protein CDS glycoside hydrolase family 68 protein -2.770732143 7.28882E-18
EAM_RS12275 hypothetical protein CDS hypothetical protein -2.729613743 1.53082E-27