Table 1.
TG6 TCR Contacts to Ld–pHF10 | Ld–pHF10 Contacts to TG6 TCR | H-bonds(< 3.5Å) or saltbridge ( < 4Å) | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
No. of Atom to AtomContacts to | No. of Atom to AtomContacts to | ||||||||||
V Domain | CDR Loop | Amino Acid |
Ldα1 | HF10 | Ldα2 | Ligand | Amino Acid |
Vα | Vβ | TG6 | Ld–pHF10 |
Vα | CDR1 | 29Y | – | – | 50 | Ldα1 | 62R | 9 | – | α29Y | 166E |
CDR2 | 50S | – | – | 3 | 66V | 7 | – | α51R | 161E | ||
51R | – | – | 27 | 73W | – | 7 | α95T | 62R | |||
54E | – | 5 | 1 | 79R | – | 1 | α96G | p5V | |||
CDR3 | 95T | 10 | – | – | HF10 | p4S | 11 | – | α98N | p5V | |
96G | 5 | 17 | – | p5V | 20 | 2 | β28Q | 149Q | |||
97A | 1 | 7 | – | p6N | 2 | 6 | β50R | p9D | |||
98N | – | 17 | – | p7E | 8 | 67 | β96R | p6N | |||
Vβ | CDR1 | 28Q | – | – | 13 | P8F | – | 15 | β96R | p7E | |
31W | – | 3 | – | P9D | – | 14 | β96R | p9D | |||
CDR2 | 50R | – | 1 | – | Ldα2 | 149Q | – | 13 | β98G | p7E | |
51S | 1 | – | – | 151G | – | 3 | β99Y | p7E | |||
CDR3 | 94A | – | 6 | – | 154E | 1 | 7 | ||||
95G | – | 12 | – | 155Y | – | 17 | |||||
96R | 6 | 44 | – | 157R | 3 | – | |||||
97G | – | 9 | – | 158A | 12 | – | |||||
98G | – | 9 | – | 161E | 12 | – | |||||
99Y | – | 14 | 27 | 162G | 3 | – | |||||
100A | – | 8 | – | 163E | 32 | – | |||||
166E | 10 | ||||||||||
167W | 7 | – | |||||||||
170R | 1 | – | |||||||||
Total | 23 | 146 | 121 | 138 | 152 |