Table 5:
Available Proteomics/Metabolomics resources
Proteome Xchange | Standardization and dissemination of mass spectrometry proteomics datasets for several species, tissues, and experimental conditions (69) | proteomexchange.org |
UniProt | Contains proteomics data for tens of thousands of species with fully sequenced genomes (312) | uniprot.org |
Biological General Repository for Interaction Datasets (BioGRID) | Curated resource of experimentally supported protein-protein and genetic interactions, includes themed projects related to cardiovascular disease and diabetes (241) | thebiogrid.org |
Search Tool for the Retrieval of Interacting Genes/Proteins (STRING) | Resource for predicted protein interactions as well as published data, provides confidence scores for biological relevance of predicted interactions (302) | string-db.org |
METLIN | Tandem mass spectrometry (MS/MS) database, helps identify known and unknown metabolites, includes lipids, amino acids, nucleotides, carbohydrates, toxicants, drugs and drug metabolites (217) | metlin.scripps.edu |
MetaboLights | Cross-species database of metabolomics studies, experimental data and metadata (122) | ebi.ac.uk/metabolights/ |
Human Metabolome Database | Comprehensive human metabolomic database, including information on biological role, physiological concentration, disease associations, pathways and reference spectra from MS/MS, GC-MS and NMR (342) | hmdb.ca |
Databases containing human and animal metabolomic and proteomic datasets