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. Author manuscript; available in PMC: 2022 Aug 12.
Published in final edited form as: Compr Physiol. 2021 Dec 29;12(1):3045–3084. doi: 10.1002/cphy.c210010

Table 5:

Available Proteomics/Metabolomics resources

Proteome Xchange Standardization and dissemination of mass spectrometry proteomics datasets for several species, tissues, and experimental conditions (69) proteomexchange.org
UniProt Contains proteomics data for tens of thousands of species with fully sequenced genomes (312) uniprot.org
Biological General Repository for Interaction Datasets (BioGRID) Curated resource of experimentally supported protein-protein and genetic interactions, includes themed projects related to cardiovascular disease and diabetes (241) thebiogrid.org
Search Tool for the Retrieval of Interacting Genes/Proteins (STRING) Resource for predicted protein interactions as well as published data, provides confidence scores for biological relevance of predicted interactions (302) string-db.org
METLIN Tandem mass spectrometry (MS/MS) database, helps identify known and unknown metabolites, includes lipids, amino acids, nucleotides, carbohydrates, toxicants, drugs and drug metabolites (217) metlin.scripps.edu
MetaboLights Cross-species database of metabolomics studies, experimental data and metadata (122) ebi.ac.uk/metabolights/
Human Metabolome Database Comprehensive human metabolomic database, including information on biological role, physiological concentration, disease associations, pathways and reference spectra from MS/MS, GC-MS and NMR (342) hmdb.ca

Databases containing human and animal metabolomic and proteomic datasets