Table 2.
List of candidate genes located at associated SNP regions for % change in root and shoot weights.
| Trait | SNP | Chr | Pos | Distance | Gene | Start | End | Description | Distance from the SNP and gene | |
|---|---|---|---|---|---|---|---|---|---|---|
| % Root Wt | chr6_37966006 | 6 | 37,966,006 | 1897 | − 4579 | Spo07469 | 37,964,109 | 37,970,585 | O-fucosyltransferase family protein | On gene |
| − 5172 | − 11,479 | Spo07470 | 37,971,178 | 37,977,485 | Unknown protein | Within 10 kb | ||||
| 10,483 | 6592 | Spo07468 | 37,955,523 | 37,959,414 | DUF538 family protein | Within 10 kb | ||||
| 20,389 | 13,939 | Spo07458 | 37,945,617 | 37,952,067 | Transcription factor bHLH14 | Within 20 kb | ||||
| − 12,392 | − 24,135 | Spo07459 | 37,978,398 | 37,990,141 | Mechanosensitive channel of small conductance-like 6, putative | Within 20 kb | ||||
| − 47,093 | − 51,458 | Spo07460 | 38,013,099 | 38,017,464 | Abscisic acid receptor PYL2 (PYR1-like protein 2) (Regulatory components of ABA receptor 14) | Within 50 kb | ||||
| − 98,341 | − 108,490 | Spo07474 | 38,064,347 | 38,074,496 | Breast cancer 2 susceptibility protein | Within 100 kb | ||||
| chr6_1531056 | 6 | 1,531,056 | − 4353 | − 17,109 | Spo26174 | 1,535,409 | 1,548,165 | Unknown protein | Within 5 kb | |
| 46,378 | 39,422 | Spo26178 | 1,484,678 | 1,491,634 | TRAF-like family protein, putative | Within 50 kb | ||||
| − 75,679 | − 91,041 | Spo26172 | 1,606,735 | 1,622,097 | Splicing factor U2af large subunit B | Within 100 kb | ||||
| chr4_28292655 | 4 | 28,292,655 | − 27,236 | − 32,810 | Spo23961 | 28,319,891 | 28,325,465 | Unknown protein | Within 30 kb | |
| − 41,374 | − 69,747 | Spo23960 | 28,334,029 | 28,362,402 | Imidazole glycerol phosphate synthase subunit HisF | Within 50 kb | ||||
| − 80,274 | − 96,844 | Spo23948 | 28,372,929 | 28,389,499 | tRNA pseudouridine synthase (5.4.99.-) | Within 100 kb | ||||
| % Shoot Wt | chr2_18480277 | 2 | 18,480,277 | 28,405 | 7215 | Spo22959 | 18,451,872 | 18,473,062 | Protein kinase | Within 10 kb |
| − 98,011 | − 107,689 | Spo22961 | 18,578,288 | 18,587,966 | Transducin/WD-40 repeat protein family-like protein | Within 100 kb | ||||
| chr4_47598760 | 4 | 47,598,760 | 30,976 | 12,183 | Spo20482 | 47,567,784 | 47,586,577 | Unknown protein | Within 20 kb | |
| 22,833 | 20,436 | Spo20477 | 47,575,927 | 47,578,324 | HAT family dimerisation domain containing protein | Within 30 kb | ||||
| 36,165 | 31,586 | Spo20481 | 47,562,595 | 47,567,174 | RING/U-box superfamily protein, putative | Within 50 kb | ||||