Table 2.

Data records.

Filename	Location	Description
Manes TLR Chemotaxis 2022.sky.zip	10.6069/44s8-9f68	Skyline LC-PRM datafile (from the Table 1 samples), the spectral libraries, and the raw data (ProteomeXchange: PXD031697).
Targeted Proteins.xlsx	10.6069/44s8-9f68	Target proteins
Targeted Peptides.xlsx	10.6069/44s8-9f68	Target peptides
Transition List.xlsx	10.6069/44s8-9f68	Scheduled LC-PRM transitions
Skyline Raw Results.xlsx	10.6069/44s8-9f68	Raw data exported from the Skyline file of annotated mass spectrometry data (from LC-PRM of the Table 1 samples)
Final Quantitation Results.xlsx	10.6069/44s8-9f68	The final peptide- and protein-level quantitation results (from LC-PRM of the Table 1 samples)
Phosphoprotein Quantification.xlsx	10.6069/44s8-9f68	The final phosphoprotein quantitation results (from LC-PRM of the Table 1 samples)
Proteome-wide estimated abundances.xlsx	10.6069/44s8-9f68	Proteome-wide abundance estimates made using the RNA-seq data
Miscellaneous estimated abundances.xlsx	10.6069/44s8-9f68	Seventeen other abundance estimates (not made using the RNA-seq data; e.g., of lipids)

LC-PRM, liquid chromatography coupled to parallel reaction monitoring mass spectrometry; TLR, Toll-like receptor.