Table 1.
DNA design for MolBoolean
| Name | Modification | Sequence (5′ → 3′) |
|---|---|---|
| Circle part 1 | 5′ phosphate | TTTATCTATATCTGCCACGCTACTTACGTCTCTCGTCTGATGCTCCACCTCATATATAAATTGTGTCCACTCGTCTCACTGCTCAACTACCTACCTCAGGAGAAACCTTTACTT |
| Circle part 2 | 5′ phosphate | CGAGGTGCTTTTAGCACCTCGAAGTAAAGCTATCCACTGTCACCAACTACTAGATAAACGTCACACTTTTCGTGTGACG |
| Arm A | 5′ aldehyde or oYo-link | AAAAAAAAACTCCTGAGGTAGGTAGTTGAGCAGCATCCGCACTTATAGCTGCAGTGAGACGAGTGGACAC |
| Arm B | 5′ aldehyde or oYo-link | AAAAAAAAATGAGGTGGAGCATCAGACGGTAATTAACCCGCCCCGTACGAGAGACGTAAGTAGCGTGGCA |
| Tag A | 5′ phosphate | CTGCAGCTATAAGTGCGGATG |
| Tag B | 5′ phosphate | CGTACGGGGCGGGTTAATTAC |
| Detection oligo A | 5′ Texas Red / Atto565 2′-MeO-U | CTGCAGCTATAAGTGCGGATGUUU |
| Detection oligo B | 5′ Atto647N 2′-MeO-U | CGTACGGGGCGGGTTAATTACUUU |
| Padlock A | 5′ phosphate | AGTGCGGATGCTGCTCAACTACCTACACCTCGAAGTAAAGCTATCCACTGTCACCAACTACTAGATAAACGTCACTCCACTCGTCTCACTGCAGCTATA |
| Padlock B | 5′ phosphate | GGTTAATTACCGTCTGATGCTCCACACCTCGAAGTAAAGCTATCCACTGTCACCAACTACTAGATAAACGTCACCTACTTACGTCTCTCGTACGGGGCG |