TABLE 2.
Exploration of isoleucine biosynthesis
| Pathway(s) | Carbon atom analyzed | Relative abundance of indicated intact carbon fragmenta at:
|
|||
|---|---|---|---|---|---|
| Mid-exponential phase
|
Early stationary phase
|
||||
| f(1) | f(2) or f(2*) | f(1) | f(2) or f(2*) | ||
| Experimentalb | Ile-δb | 0.31 | 0.69 | 0.32 | 0.68 |
| Ile-α | 0.16 | 0.84 | 0.17 | 0.83 | |
| Pyruvate and threoninec | Ile-δb | 0.31 | 0.69 | 0.32 | 0.68 |
| Ile-α | 0.16 | 0.84 | 0.17 | 0.83 | |
| Pyruvated (precursors, pyruvate and acetyl-CoA) | Ile-δb | 0.05 | 0.95 | 0.05 | 0.95 |
| Ile-α | 0.05 | 0.95 | 0.05 | 0.95 | |
| Threonine (precursors, threonine and pyruvate)e | Ile-δb | 0.51 | 0.49 | 0.53 | 0.47 |
| Ile-α | 0.25 | 0.75 | 0.26 | 0.74 | |
| Glutamate (precursors, glutamate and pyruvate)f | Ile-δb | 1.00 | 0.00 | 0.98 | 0.02 |
| Ile-α | 0.56 | 0.44 | 0.57 | 0.43 | |
For the definitions of f(1), f(2), and f(2*), see Materials and Methods. f(2) denotes fractions for Ile-δ, and f(2*) denotes fractions for Ile-α. f(2){Ile-α} = f(3){Ile-α} = 0.00 (Table 1; Fig. 3). All values except the experimental values are predictions.
The fractions for Ile-γ1 are not given since those derived from Ile-δ and Ile-γ1 provide the same information (63).
Contributions of the pyruvate and threonine pathways, 44 and 56%, respectively.
Calculated with equations 1 and 2.
Calculated with equations 3 and 4.
Calculated with equations 5 and 6.