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. 2022 Aug 15;13:4802. doi: 10.1038/s41467-022-32223-1

Table 1.

Subunit interactions in the VSV nucleocapsid

Intra-layer N contacts IAa2)
Lateral intra-layer contacts
  Interface 1 Single stranded RNA bound to N subunit 1055
  Interface 2 Ni N-terminal arm interacts with Ni-1 C-terminal lobe and with Ni-2 extended loop 793, 354
  Interface 3 Ni extended loop interacts with Ni+1 C-terminal lobe and with Ni+2 N-terminal arm 683, 354
  Interface 4 Ni N-terminal lobe interacts with Ni+1 N-terminal lobe 442
  Interface 5 Ni C-terminal lobe interacts with Ni+1 C-terminal lobe 207
Axial intra-layer contacts
  Interface A Ni subunit interacts with Ni+39 subunit 94
  Interface B Ni subunit interacts with Ni+38 subunit 18
Intra-layer M1 contacts IA (Å2)
Lateral intra-layer contacts
 Interface 6 M1i globular domain interacts with M1i+1 globular domain 65
Axial intra-layer contacts
  Interface C M1i self-association motif interacts with M1i-38 globular domain 400
  Interface D M1i globular domain interacts with M1i+39 globular domain 78
Intra-layer M2 contacts IA (Å2)
Axial intra-layer contacts
  Interface E M2i globular domain interacts with M2i+38 globular domain 49
Inter-layer N-M1 contacts IA (Å2)
Radial inter-layer contacts
  Interface i Ni C-terminal lobe interacts with M1i globular domain 345
  Interface ii Ni C-terminal lobe interacts with M1i-38 globular domain 310
  Interface iii Ni C-terminal lobe interacts with M1i+1 globular domain 117
Inter-layer M1-M2 contacts IA (Å2)
Radial inter-layer contacts
  Interface iv M1i globular domain interacts with M2i globular domain 600
  Interface v M1i globular domain interacts with M2i+1 globular domain 430

aIA: interface area (buried accessible surface area upon interface formation).